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0550cfe0e2
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adding separae script for getting results for mcsm
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2020-04-09 15:42:56 +01:00 |
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7cee9b21e2
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refactoring bash into python to run mcsm
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2020-04-08 18:27:51 +01:00 |
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7a8bbc6595
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minor tweaks
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2020-04-08 18:27:09 +01:00 |
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fe3d431a3d
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combine df script with command line args and added method
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2020-04-08 12:44:17 +01:00 |
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c025a22343
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correcting indendation
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2020-04-08 12:43:37 +01:00 |
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30aa64fd2b
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refactoring: added command line args to combine_dfs
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2020-04-08 11:44:53 +01:00 |
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49a38dd1ae
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saving work for today
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2020-04-07 17:57:34 +01:00 |
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569b7c6c7f
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adapted rd_df script to make it take command line args and define function
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2020-04-07 17:42:59 +01:00 |
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811027e34d
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tidy kd_df script
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2020-04-07 17:42:06 +01:00 |
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02488ea23e
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adapted kd calc script with command line args and made it into a function
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2020-04-07 16:45:59 +01:00 |
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6afe202931
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kd script with command line args and as function
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2020-04-07 16:39:50 +01:00 |
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44577b4a0c
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updating kd script to take command line args
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2020-04-07 16:13:54 +01:00 |
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24c7ade7c4
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renamed file for consistency
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2020-04-07 16:04:01 +01:00 |
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f690c75ca0
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modified dssp_df to handle multiple chains
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2020-04-07 16:02:19 +01:00 |
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d161fcd0f3
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added dssp.py that runs, processes and outputs csv
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2020-04-07 15:08:18 +01:00 |
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b0e56328ef
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adding settings params
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2020-04-06 19:04:35 +01:00 |
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cc9cdbcad5
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refactoring code to make it take command line args
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2020-04-06 19:03:41 +01:00 |
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b5aa524914
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logoplot from df and seqs with custom height
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2020-03-29 17:11:17 +01:00 |
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34a2057d29
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added R header file to base dir to allow general access by R scripts
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2020-03-28 17:56:39 +00:00 |
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b1e4dcd376
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tidied combining plot scripts
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2020-03-28 17:54:45 +00:00 |
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e7f2a3aada
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added mutate.py script for msa generation
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2020-03-27 17:11:16 +00:00 |
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ab541aa3de
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saving work for the day
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2020-03-27 17:08:33 +00:00 |
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d1da203df0
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changed filename to the new combined output (mcsm+struct params)
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2020-03-27 12:43:48 +00:00 |
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82e96fcdba
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combining mcsm and struct params
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2020-03-27 12:39:02 +00:00 |
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afd6ca8881
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tidy code and saving work for the day
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2020-03-26 17:58:39 +00:00 |
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69e2567ffc
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added script to combined dfs of structural params like kd, dssp & rd
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2020-03-26 17:14:20 +00:00 |
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c0bac6fd7b
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changed outcols in dssp and kd outputs
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2020-03-26 17:12:59 +00:00 |
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5bab99c15f
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added residue depth processing to generate df
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2020-03-26 15:44:20 +00:00 |
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0b7a938fbd
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tidy code and renamed kd.py to kd_df.py
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2020-03-26 15:43:13 +00:00 |
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4c2fa2b600
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tidied and updated kd and dssp scripts & generated their respective outputs
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2020-03-25 18:19:23 +00:00 |
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87a847109a
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updated kd.py to relfect a merging col for combining num params later
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2020-03-25 15:20:54 +00:00 |
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de1822f491
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output from comb script & electrostatic mut changes calculated
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2020-03-25 13:42:18 +00:00 |
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96ebb85069
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updated combining df scripts for duet & lig
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2020-03-24 18:28:52 +00:00 |
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c184841951
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minor changes to variable names in .R & .py
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2020-03-24 10:36:51 +00:00 |
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dd91692673
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renamed files to make more generic
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2020-03-23 18:13:02 +00:00 |
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22a0d38563
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renamed files to make more generic
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2020-03-23 17:48:39 +00:00 |
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d42e6fbdb3
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fixed bugs and tidy code
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2020-03-23 17:43:06 +00:00 |
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b4dbad7e54
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delete old file
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2020-03-23 17:40:19 +00:00 |
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b331227023
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updated pnca_extraction and AF_OR calcs
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2020-03-23 17:36:42 +00:00 |
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eb021349fe
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bug fixes and massive clean up of data extraction script
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2020-03-23 13:33:25 +00:00 |
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8df0b7d920
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saving from work
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2020-02-27 15:16:20 +00:00 |
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77cc5bf42c
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renamed file and updated logo plot code
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2020-02-26 12:00:32 +00:00 |
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95e8205189
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added 2 logo plot scripts
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2020-02-25 19:09:43 +00:00 |
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f9837b474c
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updating mut_seq script
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2020-02-25 18:13:18 +00:00 |
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e9a95e9d3a
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hydrophobicity script
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2020-02-25 10:42:58 +00:00 |
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ed8fc4d488
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remove old surface_res3.py
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2020-02-20 12:23:56 +00:00 |
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d7ef8ef51e
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fixup
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2020-02-20 10:41:49 +00:00 |
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b56c0b8b68
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adding scripts for struct params
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2020-02-16 15:14:36 +00:00 |
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4ef68bdc1b
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remove __pycache__, update .gitignore
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2020-02-16 15:08:45 +00:00 |
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b97712edb0
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test commit
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2020-02-16 15:00:49 +00:00 |
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