tanu/LSHTM_analysis
1
0
Fork 0
Code Issues Pull requests Releases Wiki Activity
Code to be made public
69 commits 3 branches 0 tags 40 MiB
Find a file
Tanushree Tunstall 82e96fcdba combining mcsm and struct params
2020-03-27 12:39:02 +00:00
mcsm_analysis/pyrazinamide/scripts output from comb script & electrostatic mut changes calculated 2020-03-25 13:42:18 +00:00
meta_data_analysis combining mcsm and struct params 2020-03-27 12:39:02 +00:00
.gitignore remove __pycache__, update .gitignore 2020-02-16 15:08:45 +00:00
LICENCE added licence 2020-01-08 16:51:47 +00:00
mk_drug_dirs.sh updated readme andrenamed file 2020-01-08 17:17:50 +00:00
README.md test commit 2020-02-16 15:00:49 +00:00

README.md

mCSM Analysis

This repo does mCSM analysis using bash, python and R.

Requires an additional 'Data' directory. Batteries not included:-)

Assumptions

  1. git repos are cloned to ~/git
  2. Requires a Data/ in ~/git which has the struc created by mk_drug_dirs.sh

LSHTM_analysis:

subdirs within this repo

 meta\_data\_analysis/
 	*.R
 	*.py
	
 mcsm\_analysis/
	<drug>/
		scripts/
		*.R
		*.py
			mcsm/
			*.sh
			*.py
			*.R
			plotting/
			*.R

More docs here as I write them.