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34a2057d29
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added R header file to base dir to allow general access by R scripts
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2020-03-28 17:56:39 +00:00 |
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b1e4dcd376
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tidied combining plot scripts
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2020-03-28 17:54:45 +00:00 |
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e7f2a3aada
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added mutate.py script for msa generation
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2020-03-27 17:11:16 +00:00 |
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ab541aa3de
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saving work for the day
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2020-03-27 17:08:33 +00:00 |
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d1da203df0
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changed filename to the new combined output (mcsm+struct params)
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2020-03-27 12:43:48 +00:00 |
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82e96fcdba
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combining mcsm and struct params
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2020-03-27 12:39:02 +00:00 |
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afd6ca8881
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tidy code and saving work for the day
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2020-03-26 17:58:39 +00:00 |
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69e2567ffc
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added script to combined dfs of structural params like kd, dssp & rd
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2020-03-26 17:14:20 +00:00 |
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c0bac6fd7b
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changed outcols in dssp and kd outputs
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2020-03-26 17:12:59 +00:00 |
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5bab99c15f
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added residue depth processing to generate df
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2020-03-26 15:44:20 +00:00 |
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0b7a938fbd
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tidy code and renamed kd.py to kd_df.py
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2020-03-26 15:43:13 +00:00 |
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4c2fa2b600
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tidied and updated kd and dssp scripts & generated their respective outputs
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2020-03-25 18:19:23 +00:00 |
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87a847109a
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updated kd.py to relfect a merging col for combining num params later
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2020-03-25 15:20:54 +00:00 |
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de1822f491
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output from comb script & electrostatic mut changes calculated
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2020-03-25 13:42:18 +00:00 |
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96ebb85069
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updated combining df scripts for duet & lig
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2020-03-24 18:28:52 +00:00 |
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c184841951
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minor changes to variable names in .R & .py
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2020-03-24 10:36:51 +00:00 |
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dd91692673
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renamed files to make more generic
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2020-03-23 18:13:02 +00:00 |
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22a0d38563
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renamed files to make more generic
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2020-03-23 17:48:39 +00:00 |
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d42e6fbdb3
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fixed bugs and tidy code
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2020-03-23 17:43:06 +00:00 |
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b4dbad7e54
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delete old file
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2020-03-23 17:40:19 +00:00 |
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b331227023
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updated pnca_extraction and AF_OR calcs
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2020-03-23 17:36:42 +00:00 |
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eb021349fe
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bug fixes and massive clean up of data extraction script
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2020-03-23 13:33:25 +00:00 |
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8df0b7d920
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saving from work
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2020-02-27 15:16:20 +00:00 |
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77cc5bf42c
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renamed file and updated logo plot code
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2020-02-26 12:00:32 +00:00 |
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95e8205189
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added 2 logo plot scripts
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2020-02-25 19:09:43 +00:00 |
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f9837b474c
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updating mut_seq script
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2020-02-25 18:13:18 +00:00 |
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e9a95e9d3a
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hydrophobicity script
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2020-02-25 10:42:58 +00:00 |
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ed8fc4d488
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remove old surface_res3.py
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2020-02-20 12:23:56 +00:00 |
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d7ef8ef51e
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fixup
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2020-02-20 10:41:49 +00:00 |
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b56c0b8b68
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adding scripts for struct params
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2020-02-16 15:14:36 +00:00 |
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4ef68bdc1b
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remove __pycache__, update .gitignore
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2020-02-16 15:08:45 +00:00 |
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b97712edb0
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test commit
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2020-02-16 15:00:49 +00:00 |
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9e4b3c5dce
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added script to calculate electrostatic changes of mutations
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2020-02-11 15:03:21 +00:00 |
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0653a8c1e3
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updated ref dict to inc aa_calcprop
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2020-02-11 15:02:32 +00:00 |
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d12ef0ef00
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saving a and b labels in bubble plot with brackets
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2020-02-02 11:39:35 +00:00 |
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d9519b6262
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added script for KS_test for DUET
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2020-02-02 11:36:17 +00:00 |
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134dea609d
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tidy code for lineage_dist_PS
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2020-02-02 11:14:25 +00:00 |
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8c7c389562
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tidying script for lineage dist PS and separating KS test results
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2020-02-02 11:11:49 +00:00 |
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632b78320a
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added bubble plot
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2020-02-02 09:17:11 +00:00 |
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c15d1a8a95
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added script for coloured axis for ligand affinity
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2020-01-31 16:39:22 +00:00 |
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3390f80168
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remove .Rhistory
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2020-01-31 15:35:25 +00:00 |
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1d80186ab9
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Merge branch 'master' of https://git.tunstall.in/tanu/LSHTM_analysis
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2020-01-31 15:34:58 +00:00 |
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15daa6dfc1
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remove .Rhistory
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2020-01-31 15:32:32 +00:00 |
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ac34de9e79
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added subaxis plots for PS and lig separately
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2020-01-31 15:30:08 +00:00 |
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f1584bddb1
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saving previous stuff from work
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2020-01-30 08:26:21 +00:00 |
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6cbef0c3d7
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tidy script for data extraction
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2020-01-28 11:53:10 +00:00 |
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1edfe3f8f8
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Merge branch 'master' of github.com:tgttunstall/LSHTM_analysis
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2020-01-28 10:17:24 +00:00 |
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tgttunstall
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8d2456f7f2
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Update README.md
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2020-01-28 10:14:08 +00:00 |
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15391a5700
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saving data_extraction from home
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2020-01-28 10:13:01 +00:00 |
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c3c50f65f2
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saving previous work from home pc
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2020-01-28 10:13:01 +00:00 |
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