Commit graph

49 commits

Author SHA1 Message Date
6375a53feb rendering formatted pvalue on graph 2020-10-31 20:46:06 +00:00
dd54f10ad8 making it work with function and ggarrange to combine plots 2020-10-31 20:43:07 +00:00
6575fc7aba updating the function 2020-10-31 19:52:18 +00:00
9c67a208e2 added annotation to the plot with annotate, still testing 2020-10-31 19:30:12 +00:00
558f57c61e tweaking layout in test 2020-10-31 18:30:20 +00:00
8015dd4d6a fixed colours as well 2020-10-30 20:56:15 +00:00
1ed09ac20b nearly, adding correct y_pos to plot the stat labels 2020-10-30 19:48:28 +00:00
af334b559e added boxplot_stat_function.R 2020-10-30 17:23:40 +00:00
3274d3f08b testing boxplot with stats 2020-10-30 17:22:46 +00:00
ed10be8f6e testing boxplots 2020-10-30 17:10:20 +00:00
8358c0862c renamed file 2020-10-30 17:06:27 +00:00
9921f92fba saving work 2020-10-30 13:30:58 +00:00
ff1de17718 saving work 2020-10-30 13:24:11 +00:00
d854f8f750 added log bpxplots i.e boxplot_log.R 2020-10-30 13:23:29 +00:00
7946d8cf72 minor edit to titles 2020-10-30 13:22:47 +00:00
d512fd4e34 added boxplot_linear.R to separate linear and log plots 2020-10-30 13:14:42 +00:00
936bc23aa2 added summary_stats_time_group for sam and serum 2020-10-30 13:06:02 +00:00
a2dbecd03d updated un[aired stats with n_obs_complete and removed mediator vitd from sam and npa 2020-10-30 13:04:45 +00:00
1b5d353060 added summary_stats_time_group_npa.R for NPA 2020-10-30 11:57:08 +00:00
15bba91cee updated header file with packes for summary stats 2020-10-30 11:53:26 +00:00
7463f9ac1c ploting npa before sam and serum for boxplots 2020-10-29 18:56:31 +00:00
540b6c5bf7 generating plots for all sample types withoout stats 2020-10-29 18:50:25 +00:00
c26171d12c playing with display 2020-10-29 17:41:39 +00:00
2634aeeb84 added boxplot.R 2020-10-29 16:57:27 +00:00
ad537a3ace added "/" at the end of outdir_plots 2020-10-29 13:26:09 +00:00
e1f97df805 ran scripts to check 2020-10-29 13:20:51 +00:00
1e6e9eaef1 tidy scripts and using age as criteria for adults 2020-10-29 13:10:39 +00:00
49c18d390f trychecking if summary stats may be added to the output 2020-10-29 12:44:35 +00:00
bbdd2d12e5 changed df to adults df to extract relevant info 2020-10-29 10:45:49 +00:00
9e5b202f5d added legend_adjustment.R and included this in Header_TT 2020-10-26 21:40:24 +00:00
a50cb6d331 ah, found it, added lf data number check to flu stats 2020-10-26 20:18:26 +00:00
6da0bd2e00 added stats_check.R to cross check 2020-10-26 20:16:24 +00:00
f13d1212e9 apparently modifed flu stats for npa: check! 2020-10-26 20:15:44 +00:00
ae1e663caf name generation for output files for other stats 2020-10-26 16:18:20 +00:00
6e54f339d1 reformatted to generate outfile_name for flu stats 2020-10-26 16:12:51 +00:00
61fbb2f8d6 formatted non-flu stats in the same way as the flu ones 2020-10-26 14:33:20 +00:00
efcdb1a34d renamed files 2020-10-26 13:55:16 +00:00
fe382dbf89 separated checks from flu stats and added bonferrroni p 2020-10-26 13:52:15 +00:00
8e06f382c0 minor tweaks to read_data.R 2020-10-26 12:11:08 +00:00
745f45eb6d creating outdirs if doesn't exista and reading master file from backup 2020-10-26 12:02:38 +00:00
c553ef3be0 moved out old scripts 2020-10-24 23:19:23 +01:00
e99935fdd1 updated .gitignore 2020-10-24 23:15:43 +01:00
fd731f9a22 updated .gitignore 2020-10-24 23:14:35 +01:00
4e60deb63d added .gitignore 2020-10-24 23:13:22 +01:00
de5b07edc7 added Header, read_data.R & data_extraction scripts 2020-10-24 23:11:44 +01:00
69e8ac0ea8 added stats for flu subjects only sam, serum & npa 2020-10-24 23:10:49 +01:00
87559ea021 tidy up stats for all adults for sam, serum & npa 2020-10-24 23:09:49 +01:00
93973ed850 added stats_unpaired.R for sam, serum and npa 2020-10-18 17:00:19 +01:00
0dab1d5097 initialised dir with data extraction script 2020-10-16 17:43:22 +01:00