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name generation for output files for other stats

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This commit is contained in:
Tanushree Tunstall 2020-10-26 16:18:20 +00:00
parent 6e54f339d1
commit ae1e663caf
3 changed files with 15 additions and 15 deletions
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10
stats_unpaired_npa.R
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@ -18,10 +18,12 @@ rm(colnames_sam_df, expected_rows_sam_lf
rm(pivot_cols)
my_sample_type = "npa"
#=============
# Output: unpaired analysis of time for npa
#=============
stats_time_unpaired_npa = paste0(outdir_stats, "stats_time_unpaired_npa.csv")
outfile_name = paste0("stats_time_unpaired_", my_sample_type, ".csv")
stats_time_unpaired = paste0(outdir_stats, outfile_name)
#%%========================================================
# data assignment for stats
wf = npa_df_adults_clean
@ -30,8 +32,6 @@ lf = npa_adults_lf
table(lf$timepoint)
lf$timepoint = paste0("t", lf$timepoint)
my_sample_type = "npa"
########################################################################
# Unpaired stats at each timepoint b/w groups: wilcoxon UNpaired analysis with correction
#######################################################################
@ -311,5 +311,5 @@ colnames(combined_unpaired_stats_f)
#******************
# write output file
#******************
cat("UNpaired stats for groups will be:", stats_time_unpaired_npa)
write.csv(combined_unpaired_stats_f, stats_time_unpaired_npa, row.names = FALSE)
cat("UNpaired stats for groups will be:", stats_time_unpaired)
write.csv(combined_unpaired_stats_f, stats_time_unpaired, row.names = FALSE)

10
stats_unpaired_sam.R
View file

@ -18,10 +18,12 @@ rm(colnames_npa_df, expected_rows_npa_lf
rm(pivot_cols)
my_sample_type = "sam"
#=============
# Output: unpaired analysis of time for sam
#=============
stats_time_unpaired_sam = paste0(outdir_stats, "stats_time_unpaired_sam.csv")
outfile_name = paste0("stats_time_unpaired_", my_sample_type, ".csv")
stats_time_unpaired = paste0(outdir_stats, outfile_name)
#%%========================================================
# data assignment for stats
wf = sam_df_adults_clean
@ -30,8 +32,6 @@ lf = sam_adults_lf
table(lf$timepoint)
lf$timepoint = paste0("t", lf$timepoint)
my_sample_type = "sam"
########################################################################
# Unpaired stats at each timepoint b/w groups: wilcoxon UNpaired analysis with correction
#######################################################################
@ -315,5 +315,5 @@ colnames(combined_unpaired_stats_f)
#******************
# write output file
#******************
cat("UNpaired stats for groups will be:", stats_time_unpaired_sam)
write.csv(combined_unpaired_stats_f, stats_time_unpaired_sam, row.names = FALSE)
cat("UNpaired stats for groups will be:", stats_time_unpaired)
write.csv(combined_unpaired_stats_f, stats_time_unpaired, row.names = FALSE)

10
stats_unpaired_serum.R
View file

@ -18,10 +18,12 @@ rm(colnames_sam_df, expected_rows_sam_lf
rm(pivot_cols)
my_sample_type = "serum"
#=============
# Output: unpaired analysis of time for serum
#=============
stats_time_unpaired_serum = paste0(outdir_stats, "stats_time_unpaired_serum.csv")
outfile_name = paste0("stats_time_unpaired_", my_sample_type, ".csv")
stats_time_unpaired = paste0(outdir_stats, outfile_name)
#%%========================================================
# data assignment for stats
wf = serum_df_adults_clean
@ -30,8 +32,6 @@ lf = serum_adults_lf
table(lf$timepoint)
lf$timepoint = paste0("t", lf$timepoint)
my_sample_type = "serum"
########################################################################
# Unpaired stats at each timepoint b/w groups: wilcoxon UNpaired analysis with correction
#######################################################################
@ -312,5 +312,5 @@ colnames(combined_unpaired_stats_f)
#******************
# write output file
#******************
cat("UNpaired stats for groups will be:", stats_time_unpaired_serum)
write.csv(combined_unpaired_stats_f, stats_time_unpaired_serum, row.names = FALSE)
cat("UNpaired stats for groups will be:", stats_time_unpaired)
write.csv(combined_unpaired_stats_f, stats_time_unpaired, row.names = FALSE)