LSHTM_analysis

tanu/LSHTM_analysis

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4c2fa2b600 tidied and updated kd and dssp scripts & generated their respective outputs Tanushree Tunstall 2020-03-25 18:19:23 +00:00
73e0029b65 tidied and updated kd and dssp scripts & generated their respective outputs Tanushree Tunstall 2020-03-25 18:19:23 +00:00
87a847109a updated kd.py to relfect a merging col for combining num params later Tanushree Tunstall 2020-03-25 15:20:54 +00:00
37e1d43b76 updated kd.py to relfect a merging col for combining num params later Tanushree Tunstall 2020-03-25 15:20:54 +00:00
de1822f491 output from comb script & electrostatic mut changes calculated Tanushree Tunstall 2020-03-25 13:42:18 +00:00
d44ab57f5a output from comb script & electrostatic mut changes calculated Tanushree Tunstall 2020-03-25 13:42:18 +00:00
96ebb85069 updated combining df scripts for duet & lig Tanushree Tunstall 2020-03-24 18:28:52 +00:00
954eb88c45 updated combining df scripts for duet & lig Tanushree Tunstall 2020-03-24 18:28:52 +00:00
c184841951 minor changes to variable names in .R & .py Tanushree Tunstall 2020-03-24 10:36:51 +00:00
d81be80305 minor changes to variable names in .R & .py Tanushree Tunstall 2020-03-24 10:36:51 +00:00
dd91692673 renamed files to make more generic Tanushree Tunstall 2020-03-23 18:13:02 +00:00
0001c727e0 renamed files to make more generic Tanushree Tunstall 2020-03-23 18:13:02 +00:00
22a0d38563 renamed files to make more generic Tanushree Tunstall 2020-03-23 17:48:39 +00:00
d29b81a686 renamed files to make more generic Tanushree Tunstall 2020-03-23 17:48:39 +00:00
d42e6fbdb3 fixed bugs and tidy code Tanushree Tunstall 2020-03-23 17:43:06 +00:00
8c7efcb276 fixed bugs and tidy code Tanushree Tunstall 2020-03-23 17:43:06 +00:00
b4dbad7e54 delete old file Tanushree Tunstall 2020-03-23 17:40:19 +00:00
5adef195e0 delete old file Tanushree Tunstall 2020-03-23 17:40:19 +00:00
b331227023 updated pnca_extraction and AF_OR calcs Tanushree Tunstall 2020-03-23 17:36:42 +00:00
f686563c98 updated pnca_extraction and AF_OR calcs Tanushree Tunstall 2020-03-23 17:36:42 +00:00
eb021349fe bug fixes and massive clean up of data extraction script Tanushree Tunstall 2020-03-23 13:33:25 +00:00
53d19d5dd8 bug fixes and massive clean up of data extraction script Tanushree Tunstall 2020-03-23 13:33:25 +00:00
8df0b7d920 saving from work Tanu 2020-02-27 15:16:20 +00:00
a5356cf88b saving from work Tanushree Tunstall 2020-02-27 15:16:20 +00:00
77cc5bf42c renamed file and updated logo plot code Tanu 2020-02-26 12:00:32 +00:00
61f8dc57c9 renamed file and updated logo plot code Tanushree Tunstall 2020-02-26 12:00:32 +00:00
95e8205189 added 2 logo plot scripts Tanushree Tunstall 2020-02-25 19:09:43 +00:00
95f0e28fb2 added 2 logo plot scripts Tanushree Tunstall 2020-02-25 19:09:43 +00:00
f9837b474c updating mut_seq script Tanushree Tunstall 2020-02-25 18:13:18 +00:00
7b393a2b13 updating mut_seq script Tanushree Tunstall 2020-02-25 18:13:18 +00:00
e9a95e9d3a hydrophobicity script Tanushree Tunstall 2020-02-25 10:42:58 +00:00
2805fdda40 hydrophobicity script Tanushree Tunstall 2020-02-25 10:42:58 +00:00
ed8fc4d488 remove old surface_res3.py Tanushree Tunstall 2020-02-20 12:23:56 +00:00
2ed0df41e2 remove old surface_res3.py Tanushree Tunstall 2020-02-20 12:23:56 +00:00
d7ef8ef51e fixup Tanushree Tunstall 2020-02-20 10:39:45 +00:00
26e4652d63 fixup Tanushree Tunstall 2020-02-20 10:39:45 +00:00
b56c0b8b68 adding scripts for struct params Tanushree Tunstall 2020-02-16 14:36:51 +00:00
ec25e9fd2d adding scripts for struct params Tanushree Tunstall 2020-02-16 14:36:51 +00:00
4ef68bdc1b remove __pycache__, update .gitignore Tanushree Tunstall 2020-02-16 15:08:45 +00:00
31dd74d5ac remove __pycache__, update .gitignore Tanushree Tunstall 2020-02-16 15:08:45 +00:00
b97712edb0 test commit Tanushree Tunstall 2020-02-16 15:00:49 +00:00
2e8053dc72 test commit Tanushree Tunstall 2020-02-16 15:00:49 +00:00
9e4b3c5dce added script to calculate electrostatic changes of mutations Tanushree Tunstall 2020-02-11 15:03:21 +00:00
f22f674097 added script to calculate electrostatic changes of mutations Tanushree Tunstall 2020-02-11 15:03:21 +00:00
0653a8c1e3 updated ref dict to inc aa_calcprop Tanushree Tunstall 2020-02-11 15:02:32 +00:00
56e7a96b00 updated ref dict to inc aa_calcprop Tanushree Tunstall 2020-02-11 15:02:32 +00:00
d12ef0ef00 saving a and b labels in bubble plot with brackets Tanushree Tunstall 2020-02-02 11:39:35 +00:00
84389631d5 saving a and b labels in bubble plot with brackets Tanushree Tunstall 2020-02-02 11:39:35 +00:00
d9519b6262 added script for KS_test for DUET Tanushree Tunstall 2020-02-02 11:36:17 +00:00
ec6f607655 added script for KS_test for DUET Tanushree Tunstall 2020-02-02 11:36:17 +00:00
134dea609d tidy code for lineage_dist_PS Tanushree Tunstall 2020-02-02 11:14:25 +00:00
7842d87a0d tidy code for lineage_dist_PS Tanushree Tunstall 2020-02-02 11:14:25 +00:00
8c7c389562 tidying script for lineage dist PS and separating KS test results Tanushree Tunstall 2020-02-02 11:11:49 +00:00
31383e945b tidying script for lineage dist PS and separating KS test results Tanushree Tunstall 2020-02-02 11:11:49 +00:00
632b78320a added bubble plot Tanushree Tunstall 2020-02-02 09:17:11 +00:00
8df0491721 added bubble plot Tanushree Tunstall 2020-02-02 09:17:11 +00:00
c15d1a8a95 added script for coloured axis for ligand affinity Tanushree Tunstall 2020-01-31 16:39:22 +00:00
12c24d974e added script for coloured axis for ligand affinity Tanushree Tunstall 2020-01-31 16:39:22 +00:00
3390f80168 remove .Rhistory Tanushree Tunstall 2020-01-31 15:35:25 +00:00
c5d47c1a18 remove .Rhistory Tanushree Tunstall 2020-01-31 15:35:25 +00:00
1d80186ab9 Merge branch 'master' of https://git.tunstall.in/tanu/LSHTM_analysis Tanushree Tunstall 2020-01-31 15:34:58 +00:00
340f490d70 Merge branch 'master' of https://git.tunstall.in/tanu/LSHTM_analysis Tanushree Tunstall 2020-01-31 15:34:58 +00:00
15daa6dfc1 remove .Rhistory Tanushree Tunstall 2020-01-31 15:32:32 +00:00
077231b240 remove .Rhistory Tanushree Tunstall 2020-01-31 15:32:32 +00:00
ac34de9e79 added subaxis plots for PS and lig separately Tanushree Tunstall 2020-01-31 15:30:08 +00:00
c73c5571a7 added subaxis plots for PS and lig separately Tanushree Tunstall 2020-01-31 15:30:08 +00:00
f1584bddb1 saving previous stuff from work Tanu 2020-01-30 08:25:45 +00:00
29022c5462 saving previous stuff from work Tanushree Tunstall 2020-01-30 08:25:45 +00:00
6cbef0c3d7 tidy script for data extraction Tanushree Tunstall 2020-01-28 11:53:10 +00:00
c10d54f104 tidy script for data extraction Tanushree Tunstall 2020-01-28 11:53:10 +00:00
1edfe3f8f8 Merge branch 'master' of github.com:tgttunstall/LSHTM_analysis Tanushree Tunstall 2020-01-28 10:17:24 +00:00
366bb3960d Merge branch 'master' of github.com:tgttunstall/LSHTM_analysis Tanushree Tunstall 2020-01-28 10:17:24 +00:00
8d2456f7f2 Update README.md tgttunstall 2020-01-14 11:22:41 +00:00
d787f6fd45 Update README.md Tanushree Tunstall 2020-01-14 11:22:41 +00:00
15391a5700 saving data_extraction from home Tanushree Tunstall 2020-01-28 10:10:16 +00:00
1e304e4f9d saving data_extraction from home Tanushree Tunstall 2020-01-28 10:10:16 +00:00
c3c50f65f2 saving previous work from home pc Tanushree Tunstall 2020-01-23 09:29:20 +00:00
772fd63d9f saving previous work from home pc Tanushree Tunstall 2020-01-23 09:29:20 +00:00
4d2d03f634 added coloured axis barplots Tanu 2020-01-22 15:09:21 +00:00
87060c036f added coloured axis barplots Tanushree Tunstall 2020-01-22 15:09:21 +00:00
bcf822d6e4 updated lineage dist for LIG for consistency Tanu 2020-01-22 11:34:59 +00:00
dd7e48d7e2 updated lineage dist for LIG for consistency Tanushree Tunstall 2020-01-22 11:34:59 +00:00
4f06e42ee4 graphs for PS lineage dist for all and dr muts Tanu 2020-01-22 10:12:09 +00:00
f43878def2 graphs for PS lineage dist for all and dr muts Tanushree Tunstall 2020-01-22 10:12:09 +00:00
4bcb81e9be saving data_extraction from home Tanushree Tunstall 2020-01-28 10:10:16 +00:00
a3c564790a saving data_extraction from home Tanushree Tunstall 2020-01-28 10:10:16 +00:00
be213cb7e9 saving previous work from home pc Tanushree Tunstall 2020-01-23 09:29:20 +00:00
0ebd8a6d4b saving previous work from home pc Tanushree Tunstall 2020-01-23 09:29:20 +00:00
cae9c550a4 added coloured axis barplots Tanu 2020-01-22 15:09:21 +00:00
c56a5e4497 added coloured axis barplots Tanushree Tunstall 2020-01-22 15:09:21 +00:00
2df031c02a updated lineage dist for LIG for consistency Tanu 2020-01-22 11:34:59 +00:00
5ebb4a2d25 updated lineage dist for LIG for consistency Tanushree Tunstall 2020-01-22 11:34:59 +00:00
c1ea688c5c graphs for PS lineage dist for all and dr muts Tanu 2020-01-22 10:12:09 +00:00
4de4549430 graphs for PS lineage dist for all and dr muts Tanushree Tunstall 2020-01-22 10:12:09 +00:00
ec37e3c1f6

Update README.md tgttunstall 2020-01-14 11:29:13 +00:00
78c2a64cc9 Update README.md Tanushree Tunstall 2020-01-14 11:29:13 +00:00
3c20be5615 updated README.md Tanushree Tunstall 2020-01-14 11:26:57 +00:00
50ade050c2

Update README.md tgttunstall 2020-01-14 11:22:41 +00:00
fee3c2c13c Update README.md Tanushree Tunstall 2020-01-14 11:22:41 +00:00
d410459e25 added file to generate mutant seqs Tanushree Tunstall 2020-01-13 16:09:49 +00:00