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645827570f
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added ggridges_lineage_country.R for dist by country
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2020-09-15 12:50:25 +01:00 |
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ee69445f11
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updated gitignore to include TO_DO/
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2020-09-14 17:26:28 +01:00 |
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09e20cf7b3
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added mutate.py and run_mutate.sh to create MSA aligbments for mutant sequences required to generate logoplot from sequence in R
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2020-09-14 15:17:49 +01:00 |
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3612ef0f2d
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saving logoplot attempts
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2020-09-14 15:13:52 +01:00 |
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a5fdf01d25
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added corr_plots_foldx.R
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2020-09-11 20:28:18 +01:00 |
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e1da853cf1
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updated figure for multi mut plot
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2020-09-11 19:30:20 +01:00 |
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968b57105f
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added logo_multiple_muts.R
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2020-09-11 18:12:06 +01:00 |
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431e606448
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added check for active site mut count
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2020-09-11 17:41:40 +01:00 |
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fadd61bf57
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saving extreme muts analysis
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2020-09-11 16:43:27 +01:00 |
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7e4be21575
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added extreme_muts.R
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2020-09-11 16:07:23 +01:00 |
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8d9ede186c
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added delta symbol to plotting_data.R and pretty labels for dr_other_muts figure
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2020-09-11 14:40:37 +01:00 |
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ecbc7541e9
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added plotting/other_plots_data.R
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2020-09-11 12:52:17 +01:00 |
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1262df40c9
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results for electrostatic changes
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2020-09-11 10:27:56 +01:00 |
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078644c322
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write merged_df3 files from combining_dfs_plotting
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2020-09-11 09:51:53 +01:00 |
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c124f49041
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add scripts/mut_electrostatic_changes.py
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2020-09-10 20:18:35 +01:00 |
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26d0d7f42d
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updated notes with supp table colnames
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2020-09-10 20:15:00 +01:00 |
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c1041ad273
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updated logo plot data to source from combining_df_plotting.R
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2020-09-10 19:58:33 +01:00 |
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e690f5beba
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added logo plot
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2020-09-10 19:56:33 +01:00 |
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c4225cec4f
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updated Header file with Logolas and ggseqlogo
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2020-09-10 19:55:21 +01:00 |
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d4e75d5f64
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added merged_df3_short.csv for supp tables and struct figures
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2020-09-10 19:17:05 +01:00 |
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8be1418a32
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saving work
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2020-09-10 19:16:24 +01:00 |
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6934faca10
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saving other_plots.R
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2020-09-10 17:53:49 +01:00 |
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5102bbea1b
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Merge branch 'master' of github.com:tgttunstall/LSHTM_analysis
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2020-09-10 16:14:46 +01:00 |
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f415b0b239
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changes
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2020-09-10 16:06:14 +01:00 |
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cf732a3bcc
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saving work yet again to be extra sure
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2020-09-10 16:03:04 +01:00 |
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65841e4f5b
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saving recovered combining_dfs_plotting.R after editing
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2020-09-10 15:52:22 +01:00 |
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68050a93b4
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move combining_dfs_plotting.R
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2020-09-10 15:36:17 +01:00 |
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fdecc944fc
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re-adding deleted combining_dfs_plotting.R
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2020-09-10 15:28:10 +01:00 |
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d43ecfa1dc
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updated gitignore and saving workk
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2020-09-10 14:45:10 +01:00 |
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1708194912
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added boxplots and stats for other numerical params
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2020-09-10 14:09:40 +01:00 |
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fc47c58f91
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saving work after correlation plots
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2020-09-09 20:56:07 +01:00 |
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9bee97052e
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added correlation plots
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2020-09-09 20:48:21 +01:00 |
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f3f86d6651
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renamed file
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2020-09-09 19:11:06 +01:00 |
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2c2c2c1a60
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regenerated combined_or figure with correct muts
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2020-09-09 19:03:52 +01:00 |
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f85b1bd902
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script to generate combined ps plot wit af and or
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2020-09-09 18:57:28 +01:00 |
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e570454cf2
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saving work
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2020-09-09 18:56:59 +01:00 |
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5025e47983
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renamed lineage_dist
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2020-09-09 17:34:32 +01:00 |
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f424f4e2d6
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corrected subcols_axis name in sucols_all_PS
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2020-09-09 13:36:37 +01:00 |
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080cd6375d
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lineage dist plots combined generated
Please enter the commit message for your changes. Lines starting
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2020-09-09 13:18:57 +01:00 |
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19a984f228
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generated lineage dist plots combined. needs tweaking
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2020-09-09 12:53:53 +01:00 |
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31b98fb3d3
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plotting script with resolved gene metadata
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2020-09-09 12:00:42 +01:00 |
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774b34ef00
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updated dir.R
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2020-09-09 11:45:09 +01:00 |
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09e4f7bfbd
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add dirs and resolving_ambiguous_muts
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2020-09-09 11:36:40 +01:00 |
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b7c7ffc018
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`resolved ambiguous muts and generated clean output. Also seaprated dir.R
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2020-09-09 11:26:13 +01:00 |
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46b43cf261
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changing category of ambiguous muts
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2020-09-08 18:51:03 +01:00 |
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eb5491aad9
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outputting revised all params file
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2020-09-08 17:52:45 +01:00 |
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42986bb119
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hopefully finally sorted data merges!
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2020-09-08 17:46:52 +01:00 |
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fe49a45447
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various changes
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2020-09-08 17:13:02 +01:00 |
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5d9561f88a
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trying other num param plots
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2020-09-07 17:17:56 +01:00 |
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648be02665
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ks test script added
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2020-09-07 15:27:53 +01:00 |
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