1a513913ce
reflected the factor thing as been added as new additon
2022-08-05 20:00:04 +01:00
ae8bc8ae85
added as.factor in unpired stats
2022-08-05 19:58:31 +01:00
9c955cddc0
still playing
2022-08-05 18:49:26 +01:00
92fba43dc1
mods
2022-08-05 18:32:23 +01:00
57433607bc
lf_bp2: add a "monochrome" option
2022-08-05 18:28:10 +01:00
d5bc1c272e
lf_bp2
2022-08-05 18:13:44 +01:00
33925dafe9
things
2022-08-05 16:13:57 +01:00
cc27ffe82f
added the rev script that i used to develop the trimmed version
2022-08-05 14:36:58 +01:00
05ab89ec09
git trimmed downthe dm_om_data.R
2022-08-05 14:36:02 +01:00
fae846395d
fix
2022-08-05 12:52:51 +01:00
31148dfbdc
lf_bp fuckage
2022-08-05 12:46:28 +01:00
c0f59bc9c9
breakage
2022-08-05 12:45:16 +01:00
95131abc3c
consurf fixes
2022-08-04 16:48:53 +01:00
bf41d01b39
multiple script updates and bug fixes
2022-08-04 16:48:31 +01:00
599cd7493f
buggy bugs that bug me
2022-08-04 15:18:23 +01:00
e1b8e103ea
saving from my panino, made lineage dist plots
2022-08-04 13:47:24 +01:00
1efb534f0f
fix some derps
2022-08-04 13:46:52 +01:00
61c7a30835
minor tidy and leble adjust sizes for simple barplots
2022-08-04 10:26:18 +01:00
aabe466599
added plots for thesis
2022-08-03 21:32:55 +01:00
41c4996426
more of the previous thing
2022-08-03 20:51:32 +01:00
bdbc97c40a
fix many plot functions to stop them using the "g=ggplot()" pattern,
...
which annoyingly throws away lots of useful data that RShiny needs for
clickable plots. Also split the "flame bar" for ligand distance out into
separate functions in generate_distance_colour_map.R. This can now be
easily incorporated into any "wide" graph showing all positions.
2022-08-03 18:58:27 +01:00
e498d46f8b
consurf plot: add debug option. logoP SNP: distance flame tiles
2022-08-03 18:58:27 +01:00
8079dd7b6c
reran to generate merged_df3 with correct dst for dst muts. modified combining_dfs_plotting.R
2022-07-08 21:33:57 +01:00
478df927cc
horrible lineage analysis hell
2022-06-28 21:51:02 +01:00
1baf7fa9f0
lf
2022-05-25 23:44:13 +01:00
39566ceadd
lineage labels gsub now redundant in combining_dfs_plotting.R
2022-05-05 19:31:00 +01:00
4f22cd3db1
various tweaks to make the RShiny dashboards work
2022-04-28 20:21:03 +01:00
ac78fe16cd
logoP SNP adj
2022-03-06 14:48:53 +00:00
56a6aa8c7e
lineage_dist: add all_lineages feature
2022-03-06 13:31:43 +00:00
8fa585417e
tweaks for params
2022-03-02 19:42:24 +00:00
bf3194259e
lineage: toggle for "all lineages"
2022-03-02 15:54:09 +00:00
6c6709e41e
various changes
2022-03-02 11:44:04 +00:00
2274f01f23
combined msa and wt seq into 1 list so only list is passed as an arg for plotting ED plots
2022-02-15 08:31:58 +00:00
d38521e03a
added placeholder defaults for functions in R to make sure that R shiny layput works with a data set for meeting tomorrow
2022-02-14 19:33:00 +00:00
0460ca1708
added consurf plot function and corresponding test script
2022-02-14 11:16:30 +00:00
18e1f14455
saving changes
2022-02-14 11:14:40 +00:00
d13484e8f5
added function lineage_plot_data.R and corresponding test script, also renamed corr_plot_df.R to corr_plot_data and corresponing test script
2022-02-01 16:25:58 +00:00
3d45780c1a
updated docs for dm_om_data.R
2022-02-01 16:23:03 +00:00
e795c00831
added gene conditions to test_dm_om_data.R
2022-02-01 10:54:10 +00:00
5779b3fe87
added function to get wf and lf data and corresponding test
2022-01-31 17:36:34 +00:00
a287b801f7
saving before commiting
2022-01-31 17:36:00 +00:00
ea931b59f3
relaced ligand_distance with the variable
2022-01-30 09:47:56 +00:00
8df4a85798
deleted accidental blank line
2022-01-29 18:10:38 +00:00
6b7b5e6c98
saving work
2022-01-29 18:08:07 +00:00
1035547309
added function to extract data for correlation plots and corresponding test script
2022-01-29 17:31:02 +00:00
7317156bba
updated docs for the logo functions and tested all of them again
2022-01-26 15:53:53 +00:00
2f7f40efb1
added a few tweaks to check logoplots
2022-01-26 15:22:13 +00:00
1b20f09075
tested edplot with alr gene
2022-01-26 13:35:57 +00:00
8750e3126a
renamed logoP.R --> logoP_or.R
2022-01-26 12:37:08 +00:00
a2da95ef7c
added ed_pfm_data.R function and its corresponding test
2022-01-26 11:55:38 +00:00
