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LSHTM_analysis/scripts/functions
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Tanushree Tunstall bdbc97c40a fix many plot functions to stop them using the "g=ggplot()" pattern, 
which annoyingly throws away lots of useful data that RShiny needs for
clickable plots. Also split the "flame bar" for ligand distance out into
separate functions in generate_distance_colour_map.R. This can now be
easily incorporated into any "wide" graph showing all positions.
2022-08-03 18:58:27 +01:00
..
redundant added ed_pfm_data.R function and its corresponding test 2022-01-26 11:55:38 +00:00
tests various changes 2022-03-02 11:44:04 +00:00
aa_prop_bp.R added first line to all func to run from 2021-06-24 10:02:14 +01:00
bp_lineage.R various tweaks to make the RShiny dashboards work 2022-04-28 20:21:03 +01:00
bp_lineage_diversity.R lineage_dist: add all_lineages feature 2022-03-06 13:31:43 +00:00
bp_subcolours.R fix many plot functions to stop them using the "g=ggplot()" pattern, 2022-08-03 18:58:27 +01:00
combining_dfs_plotting.R reran to generate merged_df3 with correct dst for dst muts. modified combining_dfs_plotting.R 2022-07-08 21:33:57 +01:00
consurfP.R fix many plot functions to stop them using the "g=ggplot()" pattern, 2022-08-03 18:58:27 +01:00
corr_plot_data.R added function lineage_plot_data.R and corresponding test script, also renamed corr_plot_df.R to corr_plot_data and corresponing test script 2022-02-01 16:25:58 +00:00
dm_om_data.R updated docs for dm_om_data.R 2022-02-01 16:23:03 +00:00
ed_pfm_data.R updated docs for the logo functions and tested all of them again 2022-01-26 15:53:53 +00:00
generate_distance_colour_map.R fix many plot functions to stop them using the "g=ggplot()" pattern, 2022-08-03 18:58:27 +01:00
lf_bp.R lf 2022-05-25 23:44:13 +01:00
lf_unpaired_stats.R added function for stats from lf data 2021-08-27 13:01:52 +01:00
lineage_dist.R fix many plot functions to stop them using the "g=ggplot()" pattern, 2022-08-03 18:58:27 +01:00
lineage_plot_data.R added function lineage_plot_data.R and corresponding test script, also renamed corr_plot_df.R to corr_plot_data and corresponing test script 2022-02-01 16:25:58 +00:00
logoP_msa.R combined msa and wt seq into 1 list so only list is passed as an arg for plotting ED plots 2022-02-15 08:31:58 +00:00
logoP_or.R fix many plot functions to stop them using the "g=ggplot()" pattern, 2022-08-03 18:58:27 +01:00
logoP_snp.R fix many plot functions to stop them using the "g=ggplot()" pattern, 2022-08-03 18:58:27 +01:00
my_logolas.R tested edplot with alr gene 2022-01-26 13:35:57 +00:00
my_pairs_panel.R various tweaks to make the RShiny dashboards work 2022-04-28 20:21:03 +01:00
myaf_or_calcs.R added log10 OR and P values to myaf_or_calcs.R 2021-08-23 20:01:01 +01:00
mychisq_or.R added first line to all func to run from 2021-06-24 10:02:14 +01:00
plotting_data.R added additional check in combining_df_plotting.R to account for check when generating merged_df2 as muts NOT present in mcsm can create trouble, so fixed that and ran it successfully for alr and katg 2022-01-18 17:36:54 +00:00
plotting_globals.R going through functions and script for interactive plots 2022-01-12 17:58:16 +00:00
position_count_bp.R fix many plot functions to stop them using the "g=ggplot()" pattern, 2022-08-03 18:58:27 +01:00
stability_count_bp.R various tweaks to make the RShiny dashboards work 2022-04-28 20:21:03 +01:00
wideP_consurf.R fix many plot functions to stop them using the "g=ggplot()" pattern, 2022-08-03 18:58:27 +01:00