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586927ca56
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wholesale change for Header_TT.R location
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2022-01-26 11:39:03 +00:00 |
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b133b8be24
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save content
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2022-01-26 11:34:59 +00:00 |
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1c1e98ad4f
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added get_logo_heights() in my_logolas.R
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2022-01-26 11:16:02 +00:00 |
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92af9fd565
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combined logolas and raw data msa plots into 1 script and called it the same as before logoP_msa.R
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2022-01-26 11:06:04 +00:00 |
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6365fff858
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moved logoP_msa_raw to redundant
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2022-01-26 11:04:21 +00:00 |
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3bc5dcbad3
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renamed logoP_msa.R --> logoP_msa_raw.R
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2022-01-26 11:03:45 +00:00 |
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6a9f4a0cab
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added logoP_logolas.R to plot logolas like plot to show ED regions
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2022-01-24 17:23:32 +00:00 |
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9aa62b33b1
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added my_logolas.R
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2022-01-24 13:46:50 +00:00 |
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febb8f0f7f
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checked embb logo msa plot with chosen positions
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2022-01-19 19:04:43 +00:00 |
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b72ffb5d2c
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just tested logo plot msa with embb after correcting the OMINOUS fasta file
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2022-01-19 18:57:04 +00:00 |
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59eaf58747
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now definitely checked for all targets
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2022-01-18 17:43:21 +00:00 |
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b9d173a2c4
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checked combining_dfs.R for all targets
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2022-01-18 17:42:04 +00:00 |
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e2cdee2d08
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added additional check in combining_df_plotting.R to account for check when generating merged_df2 as muts NOT present in mcsm can create trouble, so fixed that and ran it successfully for alr and katg
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2022-01-18 17:36:54 +00:00 |
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8f8a9db92c
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tried ED logo, but needs work
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2022-01-18 16:53:16 +00:00 |
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00094f036a
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playing with MSA plots to allow filtering of positions, arghhh
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2022-01-18 15:30:41 +00:00 |
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4e779b2945
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saving work
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2022-01-18 11:14:25 +00:00 |
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c8c4afb28a
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added logoP_msa.R
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2022-01-17 19:11:48 +00:00 |
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68a092037b
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finding seq discrepancy in MSA for embb
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2022-01-17 19:11:10 +00:00 |
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07aedfe286
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added both test logo plots in one script
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2022-01-16 15:00:54 +00:00 |
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efe6703673
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attempted omitting snp from logo plot for OR
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2022-01-16 14:45:39 +00:00 |
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1244581cdd
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just added some minor tweaks for the logo plots with OR
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2022-01-16 13:31:32 +00:00 |
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9546355241
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updated and tested logoP_snp.R. All done nicely
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2022-01-15 13:17:26 +00:00 |
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0334188801
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adde tests scripts for logoP and logoP_snp.R
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2022-01-14 16:10:49 +00:00 |
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f640087922
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added logoP_snp.R and renamed logo_plots_func.R to logoP.R
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2022-01-14 16:09:57 +00:00 |
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f27b536157
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added option to remove empty positions from logo plot
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2022-01-14 11:07:16 +00:00 |
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4e2f5f35db
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added log option to function properly
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2022-01-14 10:50:56 +00:00 |
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3b7cea3c47
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adding legend forlogo plot
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2022-01-14 10:18:01 +00:00 |
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426a5cb0b5
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added logo_plot function and test to check it
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2022-01-13 18:55:13 +00:00 |
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344a74a9e1
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saving work for logo plots
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2022-01-13 18:53:47 +00:00 |
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7cbd9b4996
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added barebone notes for logo_plots_func.R
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2022-01-12 17:59:02 +00:00 |
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3f7bc908ec
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going through functions and script for interactive plots
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2022-01-12 17:58:16 +00:00 |
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c48fa1dbb0
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minor tidy up to check interactive graphs Rshiny
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2022-01-07 16:07:44 +00:00 |
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3ab6a3dbc1
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added untracked files in scripts and dynamut
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2022-01-04 12:26:54 +00:00 |
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5cd6c300a7
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saving minor update to function fix
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2021-09-17 13:35:48 +01:00 |
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e115c3636c
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fixed lf_bp function with aes_string and reformulate
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2021-09-17 13:33:19 +01:00 |
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e2d7a6567e
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minor bug fixes to allow i_graps for stability to render correctly
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2021-09-16 18:59:02 +01:00 |
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51aa321792
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sorting out bp_subcolours in interaction
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2021-09-16 12:44:42 +01:00 |
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e8734b1c4b
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sorted merged_df2 and consequently others by position in combining_dfs_plotting.R
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2021-09-16 12:43:36 +01:00 |
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56600ac3f8
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added config/ with drug gene names
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2021-09-16 10:05:28 +01:00 |
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96e6e8db5d
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saving work and tidying script
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2021-09-15 19:37:39 +01:00 |
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f0e66b2f7b
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added the scratch script as _v2 to play while repurposing bp_subcolours.R
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2021-09-15 19:34:24 +01:00 |
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2ac5ec410e
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added test_bp_subcolours.R
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2021-09-15 19:33:52 +01:00 |
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7550efbd4c
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added wideplot subcols generation within bp_subcolours.R to make it easier to call the whole thing as a function and use merged_df3 to generate plot without having to separately generate special data for it. Tested with real data on different stability params
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2021-09-15 19:29:09 +01:00 |
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449af7acf4
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fixed pos_count cals in function by specifying dplyr and changed summarize to summarise
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2021-09-15 15:46:42 +01:00 |
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bf432cd054
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more updates to pairs_panels to take colnames for plotting
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2021-09-14 18:20:12 +01:00 |
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b98977336c
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updated my_pairs_panel.R to make the dots coloured
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2021-09-14 15:36:05 +01:00 |
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27f0b15d4c
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tidied script plotting_data.R by removing superceded code
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2021-09-10 18:19:56 +01:00 |
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3ddbee8c90
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finally moved foldx_outcome and deepddg_outcome calcs to combine_dfs.py in python script i.e cleaned source data
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2021-09-10 18:19:01 +01:00 |
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5c8a9e8f00
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sorted combining_dfs.py with all other data files and tidied up get_plotting_dfs.R
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2021-09-10 18:16:41 +01:00 |
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93038fa17c
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added lineage_dist.R nad renamed lineage_bp_data file to lineage_data
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2021-09-09 16:14:14 +01:00 |
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