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52a2453327
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saving work
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2020-11-24 18:53:02 +00:00 |
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f0c0fd72d1
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perfomed LR analysis and tidyed up clinical formatting code
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2020-11-24 18:48:52 +00:00 |
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08e01abfb5
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correcting dtype for sfluv and h1n1v for data formatting clinical
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2020-11-24 13:48:53 +00:00 |
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7529549bfc
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added obesity and asthma as covariates with t1_resp score as outcome
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2020-11-23 18:31:19 +00:00 |
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9158866dda
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added regression for meds with death outcome
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2020-11-23 18:24:30 +00:00 |
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4800f804e4
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moved non-asthmatics scripts back
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2020-11-23 18:18:32 +00:00 |
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a53243a19c
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moved older regression files to extra
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2020-11-23 18:17:08 +00:00 |
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e3259f2f17
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logistic regression for outcome and meds
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2020-11-23 18:16:19 +00:00 |
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25fb702e2e
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added boxplots for non-asthmatics i.e wq boxplot_linear_na.R boxplot_log_na.R
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2020-11-20 13:16:53 +00:00 |
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e71a2ccd40
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added plot_data_na.R for plotting non-asthmatics fp adults
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2020-11-20 13:15:49 +00:00 |
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3b6776af24
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saving work
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2020-11-20 13:14:10 +00:00 |
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0d591c46f5
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added non asthmatics stats for sam and serum flu_stats_unpaired_na_sam.R and flu_stats_unpaired_na_serum.R
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2020-11-20 12:38:10 +00:00 |
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1562a09631
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added quick summary to see sig meds just before writing file
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2020-11-20 12:36:55 +00:00 |
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17aebc26e8
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added non asthmatics analysis data_extraction_formatting_non_asthmatics.R and flu_stats_unpaired_na_npa.R
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2020-11-20 11:43:56 +00:00 |
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b72c4df796
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reformatting code to select needed df for analysis
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2020-11-20 11:43:03 +00:00 |
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a6cbaab40a
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added flu_stats_fisher_only.R containing separate dfs based on var factor levels
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2020-11-19 18:05:57 +00:00 |
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74769b9a38
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cleaninig code
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2020-11-19 18:04:59 +00:00 |
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269918d696
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separated fisher test only and renamed logistic_outcome col
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2020-11-19 17:48:08 +00:00 |
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6e999898df
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stats for categ vars using chisq and fisher
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2020-11-19 15:40:02 +00:00 |
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46575c657f
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saving
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2020-11-19 15:39:18 +00:00 |
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c5529206d9
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added steroid_ics data for merging with clinical data for completion
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2020-11-18 16:35:10 +00:00 |
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702ff4e327
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renamed reg_cols_extraction.R to colnames_clinical_meds.R
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2020-11-18 16:11:35 +00:00 |
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66f49a0eed
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added extra/
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2020-11-18 16:04:30 +00:00 |
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76dc3fbb6b
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added data_extraction_formatting_regression.R flu_stats_unpaired_clinical.R and reg_cols_extraction.R
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2020-11-18 16:01:29 +00:00 |
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bb6e92fa0f
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separated clinical data processing from reg
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2020-11-18 16:00:26 +00:00 |
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9dbad32504
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added checks for fp adults in read_data.R
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2020-11-18 13:08:39 +00:00 |
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07de043cab
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updated read_data.R to return fp_adults as well
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2020-11-18 13:06:36 +00:00 |
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12eee6923a
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added checks.R
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2020-11-17 17:31:22 +00:00 |
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4766d6d450
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added clinical data extraction and logistic regression script
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2020-11-17 17:30:05 +00:00 |
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05f1f716f1
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updated Header_TT.R with reg libs
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2020-11-17 17:29:24 +00:00 |
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ba3c4564ea
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ran quick stats checks with wf data
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2020-11-02 18:31:29 +00:00 |
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f14c7ca64b
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outputting svg for plots with stats
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2020-11-02 17:20:38 +00:00 |
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b94d9a3fdb
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renamed file to reflect stats for linear graphs
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2020-11-02 16:39:37 +00:00 |
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abf615baeb
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removed boxplot_function as try error handle sit now!
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2020-11-02 16:37:44 +00:00 |
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a4d305d44b
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added TASK at the beginning of the scripts
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2020-11-02 16:36:52 +00:00 |
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8033c1785f
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added try catch for error handling
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2020-11-02 16:26:22 +00:00 |
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9c141326aa
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enter the commit message for your changes. Lines starting
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2020-11-02 15:04:40 +00:00 |
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b8ff7995ac
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added boxplot_stat_log.R to generate graphs with log data and stats
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2020-11-02 14:28:52 +00:00 |
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550e8b2c50
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renamed file
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2020-11-02 12:06:46 +00:00 |
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9fc9a5852b
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renamed file
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2020-11-02 12:05:55 +00:00 |
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ee35e1cb20
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renamed file boxplot_stat.R to boxplot_stat_all.R
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2020-11-02 11:37:22 +00:00 |
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26f90ee2c0
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added plot_data.R to source for plotting
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2020-11-01 16:47:54 +00:00 |
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4ca975bf81
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added boxplot_stat.R to output plots for all sample types
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2020-11-01 16:46:42 +00:00 |
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dc775a4486
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added boxplot_stat_test.R to test boxplot_stat_function independently
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2020-11-01 16:46:09 +00:00 |
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c0d993b232
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isolating function from running on data
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2020-11-01 16:44:42 +00:00 |
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eaa8416255
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changed cols for groups
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2020-10-31 20:53:44 +00:00 |
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6375a53feb
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rendering formatted pvalue on graph
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2020-10-31 20:46:06 +00:00 |
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dd54f10ad8
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making it work with function and ggarrange to combine plots
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2020-10-31 20:43:07 +00:00 |
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6575fc7aba
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updating the function
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2020-10-31 19:52:18 +00:00 |
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9c67a208e2
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added annotation to the plot with annotate, still testing
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2020-10-31 19:30:12 +00:00 |
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