added boxplot_stat_test.R to test boxplot_stat_function independently

boxplot_stat_test.R

@@ -0,0 +1,34 @@
+#!/usr/bin/Rscript   
+getwd()
+setwd("~/git/mosaic_2020/")
+getwd()
+###############################################################
+source("boxplot_stat_function.R")
+source("plot_data.R")
+#============= 
+# Output TEST
+#=============
+my_sample_name = "SAM"
+to_remove = c("ifna2a", "il29")
+lf_fp_sam2 = lf_fp_sam[!lf_fp_sam$mediator%in%to_remove,]
+
+foo = doMyPlots(lf_fp_sam2)
+
+outfile_bp = paste0("boxplots_TEST_", my_sample_name, ".pdf")
+output_boxplot_stats = paste0(outdir_plots, outfile_bp); output_boxplot_stats
+pdf(output_boxplot_stats, width=22, height=16)
+
+#med_names = c("eotaxin3", "il12p70", "itac", "il13")
+#lf_test = lf_fp_npa[lf_fp_npa$mediator%in%med_names,]
+
+#baz=cowplot::plot_grid(plotlist=foo, align = 'hv', ncol=2, nrow=2)
+foo_annot = annotate_figure(foo
+                            , top = text_grob(my_sample_name, color = "blue", face = "bold", size = 14)
+                            , bottom = text_grob("Mosaic data\nFlu positive adults (n=133)"
+                                                 , color = "blue"
+                                                 , hjust = 1, x = 0.98, face = "italic", size = 10)
+                            , left = text_grob("Levels (pg/ml)", color = "black", rot = 90, size = 18)
+)
+foo_annot
+dev.off()
+##################################################################