diff --git a/boxplot_stat_test.R b/boxplot_stat_test.R new file mode 100644 index 0000000..4866521 --- /dev/null +++ b/boxplot_stat_test.R @@ -0,0 +1,34 @@ +#!/usr/bin/Rscript +getwd() +setwd("~/git/mosaic_2020/") +getwd() +############################################################### +source("boxplot_stat_function.R") +source("plot_data.R") +#============= +# Output TEST +#============= +my_sample_name = "SAM" +to_remove = c("ifna2a", "il29") +lf_fp_sam2 = lf_fp_sam[!lf_fp_sam$mediator%in%to_remove,] + +foo = doMyPlots(lf_fp_sam2) + +outfile_bp = paste0("boxplots_TEST_", my_sample_name, ".pdf") +output_boxplot_stats = paste0(outdir_plots, outfile_bp); output_boxplot_stats +pdf(output_boxplot_stats, width=22, height=16) + +#med_names = c("eotaxin3", "il12p70", "itac", "il13") +#lf_test = lf_fp_npa[lf_fp_npa$mediator%in%med_names,] + +#baz=cowplot::plot_grid(plotlist=foo, align = 'hv', ncol=2, nrow=2) +foo_annot = annotate_figure(foo + , top = text_grob(my_sample_name, color = "blue", face = "bold", size = 14) + , bottom = text_grob("Mosaic data\nFlu positive adults (n=133)" + , color = "blue" + , hjust = 1, x = 0.98, face = "italic", size = 10) + , left = text_grob("Levels (pg/ml)", color = "black", rot = 90, size = 18) +) +foo_annot +dev.off() +##################################################################