34 lines
1.3 KiB
R
34 lines
1.3 KiB
R
#!/usr/bin/Rscript
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getwd()
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setwd("~/git/mosaic_2020/")
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getwd()
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###############################################################
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source("boxplot_stat_function.R")
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source("plot_data.R")
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#=============
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# Output TEST
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#=============
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my_sample_name = "SAM"
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to_remove = c("ifna2a", "il29")
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lf_fp_sam2 = lf_fp_sam[!lf_fp_sam$mediator%in%to_remove,]
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foo = doMyPlots(lf_fp_sam2)
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outfile_bp = paste0("boxplots_TEST_", my_sample_name, ".pdf")
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output_boxplot_stats = paste0(outdir_plots, outfile_bp); output_boxplot_stats
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pdf(output_boxplot_stats, width=22, height=16)
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#med_names = c("eotaxin3", "il12p70", "itac", "il13")
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#lf_test = lf_fp_npa[lf_fp_npa$mediator%in%med_names,]
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#baz=cowplot::plot_grid(plotlist=foo, align = 'hv', ncol=2, nrow=2)
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foo_annot = annotate_figure(foo
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, top = text_grob(my_sample_name, color = "blue", face = "bold", size = 14)
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, bottom = text_grob("Mosaic data\nFlu positive adults (n=133)"
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, color = "blue"
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, hjust = 1, x = 0.98, face = "italic", size = 10)
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, left = text_grob("Levels (pg/ml)", color = "black", rot = 90, size = 18)
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)
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foo_annot
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dev.off()
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##################################################################
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