33 lines
633 B
Markdown
33 lines
633 B
Markdown
mCSM Analysis
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=============
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This repo does mCSM analysis using Python, bash and R.
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Requires an additional 'Data' directory. Batteries not included.
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## Assumptions
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1. git repos are cloned to `~/git`
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2. Requires a `Data/` in `~/git` which has the struc created by `mk-drug-dirs.sh`
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## LSHTM\_analysis:
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subdirs within this repo
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meta\_data\_analysis/
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*.R
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*.py
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mcsm\_analysis/
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<drug>/ (generated by `meta_data_analysis/pnca_data_extraction.py`. To be replaced with command line args or config option "soon")
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scripts/
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*.R
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*.py
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mcsm/
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*.sh
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*.py
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*.R
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plotting/
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*.R
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More docs here as I write them.
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