tanu/LSHTM_analysis
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LSHTM_analysis/README.md

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mCSM Analysis

This repo does mCSM analysis using Python, bash and R.

Requires an additional 'Data' directory. Batteries not included.

Assumptions

  1. git repos are cloned to ~/git
  2. Requires a Data/ in ~/git which has the struc created by mk-drug-dirs.sh

LSHTM_analysis:

subdirs within this repo

meta_data_analysis/ *.R *.py

mcsm_analysis/ / (generated by meta_data_analysis/pnca_data_extraction.py. To be replaced with command line args or config option "soon") scripts/ *.R *.py mcsm/ *.sh *.py *.R plotting/ *.R

More docs here as I write them.