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gidb_dev

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• 080cd6375d lineage dist plots combined generated Please enter the commit message for your changes. Lines starting Tanushree Tunstall 2020-09-09 13:18:57 +01:00
• f7b55d035a lineage dist plots combined generated Please enter the commit message for your changes. Lines starting Tanushree Tunstall 2020-09-09 13:18:57 +01:00
• 19a984f228 generated lineage dist plots combined. needs tweaking Tanushree Tunstall 2020-09-09 12:53:53 +01:00
• 98cd8a74e8 generated lineage dist plots combined. needs tweaking Tanushree Tunstall 2020-09-09 12:53:53 +01:00
• 31b98fb3d3 plotting script with resolved gene metadata Tanushree Tunstall 2020-09-09 12:00:42 +01:00
• af7c55b713 plotting script with resolved gene metadata Tanushree Tunstall 2020-09-09 12:00:42 +01:00
• 774b34ef00 updated dir.R Tanushree Tunstall 2020-09-09 11:45:09 +01:00
• 3ebb0d8f06 updated dir.R Tanushree Tunstall 2020-09-09 11:45:09 +01:00
• 09e4f7bfbd add dirs and resolving_ambiguous_muts Tanushree Tunstall 2020-09-09 11:36:40 +01:00
• 8507d16b8b add dirs and resolving_ambiguous_muts Tanushree Tunstall 2020-09-09 11:36:40 +01:00
• b7c7ffc018 `resolved ambiguous muts and generated clean output. Also seaprated dir.R Tanushree Tunstall 2020-09-09 11:26:13 +01:00
• 8dbe532937 `resolved ambiguous muts and generated clean output. Also seaprated dir.R Tanushree Tunstall 2020-09-09 11:26:13 +01:00
• 46b43cf261 changing category of ambiguous muts Tanushree Tunstall 2020-09-08 18:51:03 +01:00
• f10f8f6d2a changing category of ambiguous muts Tanushree Tunstall 2020-09-08 18:51:03 +01:00
• eb5491aad9 outputting revised all params file Tanushree Tunstall 2020-09-08 17:52:45 +01:00
• e980085294 outputting revised all params file Tanushree Tunstall 2020-09-08 17:52:45 +01:00
• 42986bb119 hopefully finally sorted data merges! Tanushree Tunstall 2020-09-08 17:46:52 +01:00
• f7ab799f74 hopefully finally sorted data merges! Tanushree Tunstall 2020-09-08 17:46:52 +01:00
• fe49a45447 various changes Tanushree Tunstall 2020-09-08 17:13:02 +01:00
• e4608342a4 various changes Tanushree Tunstall 2020-09-08 17:13:02 +01:00
• 5d9561f88a trying other num param plots Tanushree Tunstall 2020-09-07 17:17:56 +01:00
• c72269dcd1 trying other num param plots Tanushree Tunstall 2020-09-07 17:17:56 +01:00
• 648be02665 ks test script added Tanushree Tunstall 2020-09-07 15:27:53 +01:00
• 4bab45c634 ks test script added Tanushree Tunstall 2020-09-07 15:27:53 +01:00
• b4affa0c94 Combining dfs for PS and lig in one Tanushree Tunstall 2020-09-07 14:05:46 +01:00
• 739e9eadf8 Combining dfs for PS and lig in one Tanushree Tunstall 2020-09-07 14:05:46 +01:00
• 2ef767f046 lineage barplot script Tanushree Tunstall 2020-09-07 11:29:28 +01:00
• 93e19e3186 lineage barplot script Tanushree Tunstall 2020-09-07 11:29:28 +01:00
• db87f98d32 updated giignore Tanushree Tunstall 2020-09-04 22:46:07 +01:00
• e0a9da9893 updated giignore Tanushree Tunstall 2020-09-04 22:46:07 +01:00
• 7460c7c97f updated combining_two_df.R for plots Tanushree Tunstall 2020-09-04 22:43:30 +01:00
• 95574d469b updated combining_two_df.R for plots Tanushree Tunstall 2020-09-04 22:43:30 +01:00
• dd1158a66c script to plot lineage dist plots Tanushree Tunstall 2020-09-04 22:40:49 +01:00
• ef3a97d664 script to plot lineage dist plots Tanushree Tunstall 2020-09-04 22:40:49 +01:00
• 645868ea27 adding missing mutation col in combining_dfs Tanushree Tunstall 2020-09-04 21:04:18 +01:00
• 5d0e2d94ce adding missing mutation col in combining_dfs Tanushree Tunstall 2020-09-04 21:04:18 +01:00
• ddefcd7841 resolving missing mutation info in combining script Tanushree Tunstall 2020-09-04 20:55:55 +01:00
• c48c5177ca resolving missing mutation info in combining script Tanushree Tunstall 2020-09-04 20:55:55 +01:00
• bba3487829 added running scripts doc Tanushree Tunstall 2020-08-26 17:20:01 +01:00
• d6552628e4 added running scripts doc Tanushree Tunstall 2020-08-26 17:20:01 +01:00
• 3f8d6695a4 all barplots generated for ps and lig Tanushree Tunstall 2020-08-26 17:18:45 +01:00
• de14752a0c all barplots generated for ps and lig Tanushree Tunstall 2020-08-26 17:18:45 +01:00
• 0220960975 reflected change in running_scripts doc Tanushree Tunstall 2020-08-26 16:41:10 +01:00
• 8ee7d4234e reflected change in running_scripts doc Tanushree Tunstall 2020-08-26 16:41:10 +01:00
• 89e881b5d4 renamed file to reflect sucols_axis is commons script sourced by ps and lig plots Tanushree Tunstall 2020-08-26 16:40:36 +01:00
• 25ff220b1d renamed file to reflect sucols_axis is commons script sourced by ps and lig plots Tanushree Tunstall 2020-08-26 16:40:36 +01:00
• 0e3f9e584b sorted subcols_axis script to generate correct axis cols for both PS and lig plots Tanushree Tunstall 2020-08-26 16:39:10 +01:00
• e0f14ed266 sorted subcols_axis script to generate correct axis cols for both PS and lig plots Tanushree Tunstall 2020-08-26 16:39:10 +01:00
• 482eeadb9a generated subcolour bps for PS Tanushree Tunstall 2020-08-26 12:45:09 +01:00
• 2e53c8007a generated subcolour bps for PS Tanushree Tunstall 2020-08-26 12:45:09 +01:00
• ed739aeb71 sourcing plotting_data for subcols_axis_PS Tanushree Tunstall 2020-08-26 12:07:04 +01:00
• 7e0bddd7d2 sourcing plotting_data for subcols_axis_PS Tanushree Tunstall 2020-08-26 12:07:04 +01:00
• b754f26f9b added ligand df in plotting Tanushree Tunstall 2020-08-26 10:02:44 +01:00
• b5ad53f7d1 added ligand df in plotting Tanushree Tunstall 2020-08-26 10:02:44 +01:00
• 73877942f4 added instructions on running plot scripts Tanushree Tunstall 2020-08-24 14:38:45 +01:00
• 1a00ab614f added instructions on running plot scripts Tanushree Tunstall 2020-08-24 14:38:45 +01:00
• 75273cebbf generated replaced Bfactor pdbs Tanushree Tunstall 2020-08-24 14:37:28 +01:00
• e696064d42 generated replaced Bfactor pdbs Tanushree Tunstall 2020-08-24 14:37:28 +01:00
• 54f9fd073b rectified mcsm_mean_stability to avereage on raw values and then scale Tanushree Tunstall 2020-08-24 13:04:25 +01:00
• 35a89f7761 rectified mcsm_mean_stability to avereage on raw values and then scale Tanushree Tunstall 2020-08-24 13:04:25 +01:00
• d76345c3de saving work to check merge conflicts resolved Tanushree Tunstall 2020-08-24 11:20:58 +01:00
• 739a648154 saving work to check merge conflicts resolved Tanushree Tunstall 2020-08-24 11:20:58 +01:00
• f468554427 sourced plotting script in mean_stability calcs Tanushree Tunstall 2020-08-21 17:33:09 +01:00
• 9a97b2d2b4 sourced plotting script in mean_stability calcs Tanushree Tunstall 2020-08-21 17:33:09 +01:00
• a448d9276b added plotting scripts from old run Tanushree Tunstall 2020-08-21 13:25:01 +01:00
• 89358cf843 added plotting scripts from old run Tanushree Tunstall 2020-08-21 13:25:01 +01:00
• d78626048c script to format snp_info.txt Tanushree Tunstall 2020-08-21 13:23:29 +01:00
• 40909d5951 script to format snp_info.txt Tanushree Tunstall 2020-08-21 13:23:29 +01:00
• acd0b8355b updated script to combine dfs Tanushree Tunstall 2020-08-21 13:22:28 +01:00
• 59cb57a795 updated script to combine dfs Tanushree Tunstall 2020-08-21 13:22:28 +01:00
• 841d18d10b sorted df by position for output in data_extraction Tanushree Tunstall 2020-08-14 17:57:12 +01:00
• 208e0b6f62 sorted df by position for output in data_extraction Tanushree Tunstall 2020-08-14 17:57:12 +01:00
• 48773a19ef tidy script for linking or_kinship with missense variant info Tanushree Tunstall 2020-08-14 16:41:11 +01:00
• 87f5a9ca05 tidy script for linking or_kinship with missense variant info Tanushree Tunstall 2020-08-14 16:41:11 +01:00
• f8f33abad8 removed if clause for filenames Tanushree Tunstall 2020-08-13 18:39:16 +01:00
• 805868ce7e removed if clause for filenames Tanushree Tunstall 2020-08-13 18:39:16 +01:00
• 2d8cb01cb7 added output file for checking Tanushree Tunstall 2020-08-11 18:34:02 +01:00
• 833e599550 added output file for checking Tanushree Tunstall 2020-08-11 18:34:02 +01:00
• dcd9a985ec saving work, ready for more remote working Tanushree Tunstall 2020-08-07 13:35:02 +01:00
• dbf8865203 saving work, ready for more remote working Tanushree Tunstall 2020-08-07 13:35:02 +01:00
• 13203e6fe0 added data cjeckings script Tanushree Tunstall 2020-08-07 13:34:24 +01:00
• 779000ad4f added data cjeckings script Tanushree Tunstall 2020-08-07 13:34:24 +01:00
• 61e41f1697 saving work Tanushree Tunstall 2020-08-07 13:33:44 +01:00
• 0e2e24134c saving work Tanushree Tunstall 2020-08-07 13:33:44 +01:00
• efe0178f4e separting data processing from plotting, started with basic_barplots_PS script Tanushree Tunstall 2020-07-16 18:59:17 +01:00
• e46e5484e8 separting data processing from plotting, started with basic_barplots_PS script Tanushree Tunstall 2020-07-16 18:59:17 +01:00
• 7d1ecbb660 replaced single quotes with double in R scripts Tanushree Tunstall 2020-07-16 14:18:18 +01:00
• 8a8790a7d1 replaced single quotes with double in R scripts Tanushree Tunstall 2020-07-16 14:18:18 +01:00
• 5e1b39cea0 mean stability values calcs and replaceBfactor plots Tanushree Tunstall 2020-07-16 14:12:08 +01:00
• eed3450236 mean stability values calcs and replaceBfactor plots Tanushree Tunstall 2020-07-16 14:12:08 +01:00
• 1f44f8ec0a calculating mean stabilty per position please enter the commit message for your changes. Lines starting Tanushree Tunstall 2020-07-16 10:37:40 +01:00
• 38759c6b0c calculating mean stabilty per position please enter the commit message for your changes. Lines starting Tanushree Tunstall 2020-07-16 10:37:40 +01:00
• 1e785a08a1 scripts generating axis coloured subcols bp for PS Tanushree Tunstall 2020-07-15 16:31:10 +01:00
• bf4a427239 scripts generating axis coloured subcols bp for PS Tanushree Tunstall 2020-07-15 16:31:10 +01:00
• 3cb33df009 made tweaks to output plot filenames Tanushree Tunstall 2020-07-15 16:29:36 +01:00
• 636100d383 made tweaks to output plot filenames Tanushree Tunstall 2020-07-15 16:29:36 +01:00
• 55f03bc343 adding plots as I tidy and generate Tanushree Tunstall 2020-07-15 13:50:07 +01:00
• b2b95b80fd adding plots as I tidy and generate Tanushree Tunstall 2020-07-15 13:50:07 +01:00
• e41fb78e37 saved work before adding plots Tanushree Tunstall 2020-07-15 13:36:20 +01:00
• acc6a42880 saved work before adding plots Tanushree Tunstall 2020-07-15 13:36:20 +01:00