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gidb_dev

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• 5f335a5051 added plotting/corr_plots_style2.Radded my version of pairs.panel with lower panel turned off. Also added new script for corr plots using my version of pairs.panel Tanushree Tunstall 2020-09-17 15:31:37 +01:00
• a6182f2b3d added plotting/corr_plots_style2.Radded my version of pairs.panel with lower panel turned off. Also added new script for corr plots using my version of pairs.panel Tanushree Tunstall 2020-09-17 15:31:37 +01:00
• 63e04ae600 saving work Tanushree Tunstall 2020-09-17 15:29:17 +01:00
• e8b58bfe28 saving work Tanushree Tunstall 2020-09-17 15:29:17 +01:00
• 375cdc2068 added new layput for dm_om and facet_lineage plot Tanushree Tunstall 2020-09-17 14:01:04 +01:00
• b41b33b73c added new layput for dm_om and facet_lineage plot Tanushree Tunstall 2020-09-17 14:01:04 +01:00
• a5b03e53e8 updated with two outputs: labelled and unlabelled Tanushree Tunstall 2020-09-16 15:37:56 +01:00
• 32da321f32 updated with two outputs: labelled and unlabelled Tanushree Tunstall 2020-09-16 15:37:56 +01:00
• 351e472e73 renaming and moving files Tanushree Tunstall 2020-09-16 14:57:51 +01:00
• c4e96ce7d9 renaming and moving files Tanushree Tunstall 2020-09-16 14:57:51 +01:00
• b36bfc9e9d renamed file in scratch plot/ Tanushree Tunstall 2020-09-16 14:53:53 +01:00
• 3269a27dd2 renamed file in scratch plot/ Tanushree Tunstall 2020-09-16 14:53:53 +01:00
• 25f2f9e4a2 playing with lineage_dist_dm_om Tanushree Tunstall 2020-09-16 13:23:49 +01:00
• 19287f3b4b playing with lineage_dist_dm_om Tanushree Tunstall 2020-09-16 13:23:49 +01:00
• ba02107e23 added dir scratch_plots/ to practice extra plots Tanushree Tunstall 2020-09-16 11:51:17 +01:00
• 1bc7f83916 added dir scratch_plots/ to practice extra plots Tanushree Tunstall 2020-09-16 11:51:17 +01:00
• 0f6bf3875d updated plotting_data.R with stability colours as variables Tanushree Tunstall 2020-09-16 11:47:38 +01:00
• ae11792f46 updated plotting_data.R with stability colours as variables Tanushree Tunstall 2020-09-16 11:47:38 +01:00
• 83deb64e1c saving work Tanushree Tunstall 2020-09-15 13:34:26 +01:00
• 4d34f5b5d7 saving work Tanushree Tunstall 2020-09-15 13:34:26 +01:00
• 445f3e2047 updated distribution scripts to try adding points Tanushree Tunstall 2020-09-15 13:33:28 +01:00
• aa4294dff2 updated distribution scripts to try adding points Tanushree Tunstall 2020-09-15 13:33:28 +01:00
• 44d1f64e88 updating lineage_country.R with different data slices Tanushree Tunstall 2020-09-15 13:14:33 +01:00
• 3bb2d3c78c updating lineage_country.R with different data slices Tanushree Tunstall 2020-09-15 13:14:33 +01:00
• 645827570f added ggridges_lineage_country.R for dist by country Tanushree Tunstall 2020-09-15 12:50:25 +01:00
• 65b5a3c049 added ggridges_lineage_country.R for dist by country Tanushree Tunstall 2020-09-15 12:50:25 +01:00
• ee69445f11 updated gitignore to include TO_DO/ Tanushree Tunstall 2020-09-14 17:26:28 +01:00
• 4f943bb1a3 updated gitignore to include TO_DO/ Tanushree Tunstall 2020-09-14 17:26:28 +01:00
• 09e20cf7b3 added mutate.py and run_mutate.sh to create MSA aligbments for mutant sequences required to generate logoplot from sequence in R Tanushree Tunstall 2020-09-14 15:17:49 +01:00
• f72e81664d added mutate.py and run_mutate.sh to create MSA aligbments for mutant sequences required to generate logoplot from sequence in R Tanushree Tunstall 2020-09-14 15:17:49 +01:00
• 3612ef0f2d saving logoplot attempts Tanushree Tunstall 2020-09-14 15:13:52 +01:00
• da9075458f saving logoplot attempts Tanushree Tunstall 2020-09-14 15:13:52 +01:00
• a5fdf01d25 added corr_plots_foldx.R Tanushree Tunstall 2020-09-11 20:28:18 +01:00
• ff1e1cdaf1 added corr_plots_foldx.R Tanushree Tunstall 2020-09-11 20:28:18 +01:00
• e1da853cf1 updated figure for multi mut plot Tanushree Tunstall 2020-09-11 19:30:20 +01:00
• 767418eb18 updated figure for multi mut plot Tanushree Tunstall 2020-09-11 19:30:20 +01:00
• 968b57105f added logo_multiple_muts.R Tanushree Tunstall 2020-09-11 18:12:06 +01:00
• e2a8171113 added logo_multiple_muts.R Tanushree Tunstall 2020-09-11 18:12:06 +01:00
• 431e606448 added check for active site mut count Tanushree Tunstall 2020-09-11 17:41:40 +01:00
• 4e2bf1496a added check for active site mut count Tanushree Tunstall 2020-09-11 17:41:40 +01:00
• fadd61bf57 saving extreme muts analysis Tanushree Tunstall 2020-09-11 16:43:27 +01:00
• 0665bc80a9 saving extreme muts analysis Tanushree Tunstall 2020-09-11 16:43:27 +01:00
• 7e4be21575 added extreme_muts.R Tanushree Tunstall 2020-09-11 16:07:23 +01:00
• a14fc4dc33 added extreme_muts.R Tanushree Tunstall 2020-09-11 16:07:23 +01:00
• 8d9ede186c added delta symbol to plotting_data.R and pretty labels for dr_other_muts figure Tanushree Tunstall 2020-09-11 14:40:37 +01:00
• 8648320de7 added delta symbol to plotting_data.R and pretty labels for dr_other_muts figure Tanushree Tunstall 2020-09-11 14:40:37 +01:00
• ecbc7541e9 added plotting/other_plots_data.R Tanushree Tunstall 2020-09-11 12:52:17 +01:00
• f6a440dc55 added plotting/other_plots_data.R Tanushree Tunstall 2020-09-11 12:52:17 +01:00
• 1262df40c9 results for electrostatic changes Tanushree Tunstall 2020-09-11 10:27:56 +01:00
• b0c4791206 results for electrostatic changes Tanushree Tunstall 2020-09-11 10:27:56 +01:00
• 078644c322 write merged_df3 files from combining_dfs_plotting Tanushree Tunstall 2020-09-11 09:51:53 +01:00
• b12d20e30f write merged_df3 files from combining_dfs_plotting Tanushree Tunstall 2020-09-11 09:51:53 +01:00
• c124f49041 add scripts/mut_electrostatic_changes.py Tanushree Tunstall 2020-09-10 20:18:35 +01:00
• de3cfae795 add scripts/mut_electrostatic_changes.py Tanushree Tunstall 2020-09-10 20:18:35 +01:00
• 26d0d7f42d updated notes with supp table colnames Tanushree Tunstall 2020-09-10 20:15:00 +01:00
• 09a64932ce updated notes with supp table colnames Tanushree Tunstall 2020-09-10 20:15:00 +01:00
• c1041ad273 updated logo plot data to source from combining_df_plotting.R Tanushree Tunstall 2020-09-10 19:58:33 +01:00
• 69e0c5d05f updated logo plot data to source from combining_df_plotting.R Tanushree Tunstall 2020-09-10 19:58:33 +01:00
• e690f5beba added logo plot Tanushree Tunstall 2020-09-10 19:56:33 +01:00
• 3ac5ff7078 added logo plot Tanushree Tunstall 2020-09-10 19:56:33 +01:00
• c4225cec4f updated Header file with Logolas and ggseqlogo Tanushree Tunstall 2020-09-10 19:55:21 +01:00
• 61b91bccb4 updated Header file with Logolas and ggseqlogo Tanushree Tunstall 2020-09-10 19:55:21 +01:00
• d4e75d5f64 added merged_df3_short.csv for supp tables and struct figures Tanushree Tunstall 2020-09-10 19:17:05 +01:00
• 96c95fb06c added merged_df3_short.csv for supp tables and struct figures Tanushree Tunstall 2020-09-10 19:17:05 +01:00
• 8be1418a32 saving work Tanushree Tunstall 2020-09-10 19:16:24 +01:00
• 0699ebfc3a saving work Tanushree Tunstall 2020-09-10 19:16:24 +01:00
• 6934faca10 saving other_plots.R Tanushree Tunstall 2020-09-10 17:53:49 +01:00
• 14182df12f saving other_plots.R Tanushree Tunstall 2020-09-10 17:53:49 +01:00
• 5102bbea1b Merge branch 'master' of github.com:tgttunstall/LSHTM_analysis Tanushree Tunstall 2020-09-10 16:14:46 +01:00
• c9040cad21 Merge branch 'master' of github.com:tgttunstall/LSHTM_analysis Tanushree Tunstall 2020-09-10 16:14:46 +01:00
• f415b0b239 changes Tanushree Tunstall 2020-09-10 16:06:14 +01:00
• 2540424308 changes Tanushree Tunstall 2020-09-10 16:06:14 +01:00
• cf732a3bcc saving work yet again to be extra sure Tanushree Tunstall 2020-09-10 16:03:04 +01:00
• 8874f9911f saving work yet again to be extra sure Tanushree Tunstall 2020-09-10 16:03:04 +01:00
• 65841e4f5b saving recovered combining_dfs_plotting.R after editing Tanushree Tunstall 2020-09-10 15:52:22 +01:00
• 01273a8184 saving recovered combining_dfs_plotting.R after editing Tanushree Tunstall 2020-09-10 15:52:22 +01:00
• 68050a93b4 move combining_dfs_plotting.R Tanushree Tunstall 2020-09-10 15:36:17 +01:00
• e023472091 move combining_dfs_plotting.R Tanushree Tunstall 2020-09-10 15:36:17 +01:00
• fdecc944fc re-adding deleted combining_dfs_plotting.R Tanushree Tunstall 2020-09-10 15:28:10 +01:00
• 9da808680d re-adding deleted combining_dfs_plotting.R Tanushree Tunstall 2020-09-10 15:28:10 +01:00
• d43ecfa1dc updated gitignore and saving workk Tanushree Tunstall 2020-09-10 14:45:10 +01:00
• 315b350466 updated gitignore and saving workk Tanushree Tunstall 2020-09-10 14:45:10 +01:00
• 1708194912 added boxplots and stats for other numerical params Tanushree Tunstall 2020-09-10 14:09:12 +01:00
• 4cd6c2acd7 added boxplots and stats for other numerical params Tanushree Tunstall 2020-09-10 14:09:12 +01:00
• fc47c58f91 saving work after correlation plots Tanushree Tunstall 2020-09-09 20:56:07 +01:00
• a04c3d6b0d saving work after correlation plots Tanushree Tunstall 2020-09-09 20:56:07 +01:00
• 9bee97052e added correlation plots Tanushree Tunstall 2020-09-09 20:48:21 +01:00
• 9476fac83b added correlation plots Tanushree Tunstall 2020-09-09 20:48:21 +01:00
• f3f86d6651 renamed file Tanushree Tunstall 2020-09-09 19:11:06 +01:00
• 687d5613aa renamed file Tanushree Tunstall 2020-09-09 19:11:06 +01:00
• 2c2c2c1a60 regenerated combined_or figure with correct muts Tanushree Tunstall 2020-09-09 19:03:52 +01:00
• 464186f5bd regenerated combined_or figure with correct muts Tanushree Tunstall 2020-09-09 19:03:52 +01:00
• f85b1bd902 script to generate combined ps plot wit af and or Tanushree Tunstall 2020-09-09 18:57:28 +01:00
• 41ff051dc9 script to generate combined ps plot wit af and or Tanushree Tunstall 2020-09-09 18:57:28 +01:00
• e570454cf2 saving work Tanushree Tunstall 2020-09-09 18:56:59 +01:00
• 926fe37ac3 saving work Tanushree Tunstall 2020-09-09 18:56:59 +01:00
• 5025e47983 renamed lineage_dist Tanushree Tunstall 2020-09-09 17:34:32 +01:00
• ae760d193c renamed lineage_dist Tanushree Tunstall 2020-09-09 17:34:32 +01:00
• f424f4e2d6 corrected subcols_axis name in sucols_all_PS Tanushree Tunstall 2020-09-09 13:36:37 +01:00
• 6d50b961a5 corrected subcols_axis name in sucols_all_PS Tanushree Tunstall 2020-09-09 13:36:37 +01:00