f0a9eb4eec
aadded complete obs count for corr plots and added placeholder for mcsm-na
2022-08-06 14:31:18 +01:00
f194b5ea4f
added corr plot TODO for lineage counts
2022-08-06 13:30:41 +01:00
0e777108a9
saving and strating to write
2022-08-06 13:09:26 +01:00
569e372476
agenerated corr plots with MAF and provean
2022-08-06 13:08:42 +01:00
1a513913ce
reflected the factor thing as been added as new additon
2022-08-05 20:00:04 +01:00
fe9c3f8afe
added dm_om_plots.R
2022-08-05 19:59:07 +01:00
ae8bc8ae85
added as.factor in unpired stats
2022-08-05 19:58:31 +01:00
9c955cddc0
still playing
2022-08-05 18:49:26 +01:00
92fba43dc1
mods
2022-08-05 18:32:23 +01:00
57433607bc
lf_bp2: add a "monochrome" option
2022-08-05 18:28:10 +01:00
d5bc1c272e
lf_bp2
2022-08-05 18:13:44 +01:00
33925dafe9
things
2022-08-05 16:13:57 +01:00
6cb9998c4c
added the script to redundant
2022-08-05 14:45:33 +01:00
164113f665
moved dm_om_data.R the script version to redundant and the function version has been trimmed to for readability
2022-08-05 14:44:36 +01:00
cc27ffe82f
added the rev script that i used to develop the trimmed version
2022-08-05 14:36:58 +01:00
05ab89ec09
git trimmed downthe dm_om_data.R
2022-08-05 14:36:02 +01:00
fae846395d
fix
2022-08-05 12:52:51 +01:00
31148dfbdc
lf_bp fuckage
2022-08-05 12:46:28 +01:00
c0f59bc9c9
breakage
2022-08-05 12:45:16 +01:00
14f8f5d6d4
generated lineage barplots and corr plots for conservation
2022-08-04 19:48:09 +01:00
424c1d184d
added linage barplots
2022-08-04 19:29:20 +01:00
7f9facc1e6
moved old corr files
2022-08-04 19:28:39 +01:00
dab8294a01
renamed folder
2022-08-04 18:52:03 +01:00
ad2e538ec2
separated plotting_thesis for generating plots
2022-08-04 18:47:18 +01:00
95131abc3c
consurf fixes
2022-08-04 16:48:53 +01:00
bf41d01b39
multiple script updates and bug fixes
2022-08-04 16:48:31 +01:00
599cd7493f
buggy bugs that bug me
2022-08-04 15:18:23 +01:00
e1b8e103ea
saving from my panino, made lineage dist plots
2022-08-04 13:47:24 +01:00
1efb534f0f
fix some derps
2022-08-04 13:46:52 +01:00
61c7a30835
minor tidy and leble adjust sizes for simple barplots
2022-08-04 10:26:18 +01:00
bcba0c359e
moved code for structure figure to sep sir
2022-08-03 21:33:19 +01:00
aabe466599
added plots for thesis
2022-08-03 21:32:55 +01:00
41c4996426
more of the previous thing
2022-08-03 20:51:32 +01:00
bdbc97c40a
fix many plot functions to stop them using the "g=ggplot()" pattern,
...
which annoyingly throws away lots of useful data that RShiny needs for
clickable plots. Also split the "flame bar" for ligand distance out into
separate functions in generate_distance_colour_map.R. This can now be
easily incorporated into any "wide" graph showing all positions.
2022-08-03 18:58:27 +01:00
e498d46f8b
consurf plot: add debug option. logoP SNP: distance flame tiles
2022-08-03 18:58:27 +01:00
f2709f3992
added replace b factor scripts for lig affinity and ppi2
2022-08-02 20:30:43 +01:00
87a3d7acf2
generated simple affinity plots for embb
2022-08-02 20:29:31 +01:00
214e9232c6
still trying affinity phew
2022-08-02 16:55:31 +01:00
d94aa10c9b
saving work
2022-08-01 21:44:11 +01:00
66337c289c
added scripts to generate mean stability for rpob
2022-08-01 21:41:55 +01:00
ccc877e811
attempting affintiy stuff
2022-08-01 21:41:02 +01:00
0d8979dfcb
separted cols
2022-08-01 14:09:46 +01:00
e750ee59aa
saving
2022-08-01 13:41:43 +01:00
79c261963b
sorting the ensemble and priority for ligand affinity
2022-08-01 13:36:05 +01:00
f3710bfaf5
added mcsm_mean_affinity_ensemble.R and replaceBfactor_pdb_stability.R
2022-07-31 19:25:28 +01:00
1bf66b145c
separating mcsm_mean_stability_ensemble from combined script
2022-07-31 19:24:35 +01:00
06e5363112
added scriptaa mcsm_mean_stability_ensemble.R to get ensemble of averages across predictors for stability and affinity
2022-07-31 16:29:47 +01:00
4de1e800ec
moved mut_landscape files to plotting
2022-07-31 12:01:56 +01:00
d6a63eed21
added mut_landscape.R that outputs the mutational positions and annotations for generating the structural landscape of all gene-targets
2022-07-31 12:01:56 +01:00
26f284d76e
added test_func_combined.py
2022-07-29 00:14:39 +01:00
