|
|
e78707067c
|
saving work before converting to a function
|
2021-06-11 13:25:02 +01:00 |
|
|
|
a2431b59e5
|
minor tweak to plotting_globals.R to make gene_match a global var
|
2021-06-11 11:21:20 +01:00 |
|
|
|
f6259aa517
|
moved functions/ in the scripts dir
|
2021-06-11 11:11:39 +01:00 |
|
|
|
0c3645705d
|
moved old bp scripts to redundant
|
2021-06-10 16:18:08 +01:00 |
|
|
|
dccdfe9742
|
moved plotting_func to functions and replaced 3 basic_barplots scripts with 1
|
2021-06-10 16:09:58 +01:00 |
|
|
|
5c018e23be
|
added function for position_count_bp.R
|
2021-06-10 14:46:11 +01:00 |
|
|
|
4bee48f545
|
added functions dir for further tidying and tested this with ind scripts for stability
|
2021-06-09 18:13:18 +01:00 |
|
|
|
786eaabe1a
|
moved bp function script to function/
|
2021-06-09 17:08:56 +01:00 |
|
|
|
225360fb93
|
added shiny app and turned stability bp to function
|
2021-06-09 17:05:02 +01:00 |
|
|
|
3f58a5c64c
|
saving work
|
2021-06-09 16:27:05 +01:00 |
|
|
|
776c4e0279
|
repuposed and ran basic_barplots for lig and foldx including filenames
|
2021-06-09 11:33:08 +01:00 |
|
|
|
d45a9499a2
|
repurposed basic_barplots_foldx.R
|
2021-06-09 11:24:50 +01:00 |
|
|
|
6f24fc1fac
|
uddated how to run plotting scripts. This is a cleaner version to keep up-to-date
|
2021-06-08 16:53:07 +01:00 |
|
|
|
ce8abafdfe
|
wrapper script basic_barplots_PS.R now takes cmd and calls functions to generate plots.Tested and verfiied.
|
2021-06-08 16:48:19 +01:00 |
|
|
|
b25511a239
|
tidied plotting_data.R as a function returning a lits of dfs
|
2021-06-08 16:00:28 +01:00 |
|
|
|
b8d0bc416a
|
added plotting_globals and text file with info on how to run plotting scripst
|
2021-06-04 17:26:01 +01:00 |
|
|
|
d21605b31f
|
tweaking baic bp to make generic
|
2021-06-04 17:23:41 +01:00 |
|
|
|
4f60e93abb
|
minor updates to dir.R
|
2021-06-04 15:05:52 +01:00 |
|
|
|
7242b3516b
|
adpated combining_dfs.py and plotting.R for gid and attempting to make it generic
|
2021-06-04 14:36:16 +01:00 |
|
|
|
d52534f676
|
test branch commit
|
2021-06-04 09:43:48 +01:00 |
|
|
|
18af246c24
|
saving before starting work
|
2021-06-04 09:38:17 +01:00 |
|
|
|
8009c3fe3d
|
updated counts.py with wt seq counts
|
2021-03-03 11:54:48 +00:00 |
|
|
|
c59e3f178d
|
added adjusted p-values for DM muts comparison
|
2021-02-27 10:42:04 +00:00 |
|
|
|
bbec97b00c
|
updated count.py with indel and stop codon count
|
2021-02-24 09:56:36 +00:00 |
|
|
|
9062751790
|
retrieved results for gid b8 and b9
|
2021-02-23 08:59:01 +00:00 |
|
|
|
77efd0b76d
|
retrieved gid b7 and submitted b8,b9 and b10
|
2021-02-22 09:31:29 +00:00 |
|
|
|
88dad2696f
|
retrieved results for gid b6
|
2021-02-21 16:23:22 +00:00 |
|
|
|
34c0b808ea
|
added count.py to count samples for quick checks
|
2021-02-21 16:07:33 +00:00 |
|
|
|
05562399ce
|
saving work and generating revised_figure7
|
2021-02-20 16:17:38 +00:00 |
|
|
|
9f03e6a6fd
|
dynamut retrieved b5 and b6, submitted 6 and 7
|
2021-02-20 13:05:30 +00:00 |
|
|
|
2995299179
|
code to retrieve results from batch 4 and 5 once ready
|
2021-02-19 12:09:26 +00:00 |
|
|
|
f9249d7bf2
|
updated .gitignore
|
2021-02-18 12:01:04 +00:00 |
|
|
|
d683e971d4
|
updated .gitignore to include temp dirs
|
2021-02-18 11:54:36 +00:00 |
|
|
|
8dc3a790c0
|
add files
|
2021-02-18 11:50:46 +00:00 |
|
|
|
69b62e54a5
|
running dynamut in batches
|
2021-02-18 11:27:20 +00:00 |
|
|
|
cfdd18086a
|
renamed files in dynamut for consistency
|
2021-02-18 10:52:51 +00:00 |
|
|
|
9a0e98eb24
|
renamed file in mcsm_na to be consistent
|
2021-02-18 10:51:17 +00:00 |
|
|
|
2168007f12
|
renaming file
|
2021-02-18 10:48:06 +00:00 |
|
|
|
19d89230f5
|
renamed file run_submit to run_submit_dynamut
|
2021-02-18 10:45:35 +00:00 |
|
|
|
a9a4483aee
|
renamed file run_results to run_get_results
|
2021-02-18 10:43:45 +00:00 |
|
|
|
cd06a83e13
|
ran mcsm_na for all 26 batches for gid
|
2021-02-16 13:55:31 +00:00 |
|
|
|
013bba2503
|
sunmitting mcsm_na jobs manually
|
2021-02-16 10:51:06 +00:00 |
|
|
|
b69d9d729a
|
added get_results_mcsm_na.py run_get_results.py to retrieve results for each batch run of 20 for mcsm_na
|
2021-02-15 12:22:52 +00:00 |
|
|
|
7a74fecbda
|
saving work for mcsm_na
|
2021-02-15 12:22:19 +00:00 |
|
|
|
322979406c
|
added mcsm_na_temp
|
2021-02-12 17:40:02 +00:00 |
|
|
|
1f72001689
|
added shell script to format muts for mcsm NA
|
2021-02-12 17:38:42 +00:00 |
|
|
|
c99f1cac92
|
added mcsm_na scripts to submit batches of 20
|
2021-02-12 16:51:41 +00:00 |
|
|
|
b2397ea99d
|
minor cody tidy up
|
2021-02-12 16:50:34 +00:00 |
|
|
|
9c221e6786
|
tested and added note to reflect that tar.gz needs to be made into a cmd line option
|
2021-02-12 15:32:16 +00:00 |
|
|
|
7f75b92553
|
checked tar.gz downlaod from the script with example
|
2021-02-12 15:25:32 +00:00 |
|
