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retrieved gid b7 and submitted b8,b9 and b10

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This commit is contained in:
Tanushree Tunstall 2021-02-22 09:31:29 +00:00
parent 88dad2696f
commit 77efd0b76d
2 changed files with 16 additions and 12 deletions
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12
dynamut/run_get_results_dynamut.py
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@ -24,13 +24,13 @@ indir = datadir + '/' + drug + '/input'
outdir = datadir + '/' + drug + '/output'
#==============================================================================
# batch 6: 05.txt, # RETRIEVED
my_url_file = outdir + '/dynamut_temp/dynamut_result_url_gid_b6.txt'
my_suffix = 'gid_b6'
# batch 6: 05.txt, # RETRIEVED 21 Feb 16:22
#my_url_file = outdir + '/dynamut_temp/dynamut_result_url_gid_b6.txt'
#my_suffix = 'gid_b6'
# batch 7: 06.txt, # RETRIEVED
#my_url_file = outdir + '/dynamut_temp/dynamut_result_url_gid_b7.txt'
#my_suffix = 'gid_b7'
# batch 7: 06.txt, # RETRIEVED 22 Feb 09:23
my_url_file = outdir + '/dynamut_temp/dynamut_result_url_gid_b7.txt'
my_suffix = 'gid_b7'
#==============================================================================

16
dynamut/run_submit_dynamut.py
View file

@ -29,13 +29,17 @@ my_email = 'tanushree.tunstall@lshtm.ac.uk'
my_pdb_file = indir + '/gid_complex.pdb'
#==============================================================================
# batch 6: 05.txt, # RAN:
#my_mutation_list = outdir + '/snp_batches/50/snp_batch_05.txt'
#my_suffix = 'gid_b6'
# batch 8: 07.txt, # RAN: 22 Feb 09:26
#my_mutation_list = outdir + '/snp_batches/50/snp_batch_07.txt'
#my_suffix = 'gid_b8'
# batch 7: 06.txt, # RAN:
my_mutation_list = outdir + '/snp_batches/50/snp_batch_06.txt'
my_suffix = 'gid_b7'
# batch 9: 08.txt, # RAN: 22 Feb 09:26
#my_mutation_list = outdir + '/snp_batches/50/snp_batch_08.txt'
#my_suffix = 'gid_b9'
# batch 10: 09.txt, # RAN:22 Feb 09:26
my_mutation_list = outdir + '/snp_batches/50/snp_batch_09.txt'
my_suffix = 'gid_b10'
#==============================================================================
#==========================