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c4225cec4f
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updated Header file with Logolas and ggseqlogo
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2020-09-10 19:55:21 +01:00 |
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d4e75d5f64
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added merged_df3_short.csv for supp tables and struct figures
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2020-09-10 19:17:05 +01:00 |
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8be1418a32
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saving work
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2020-09-10 19:16:24 +01:00 |
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6934faca10
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saving other_plots.R
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2020-09-10 17:53:49 +01:00 |
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5102bbea1b
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Merge branch 'master' of github.com:tgttunstall/LSHTM_analysis
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2020-09-10 16:14:46 +01:00 |
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f415b0b239
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changes
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2020-09-10 16:06:14 +01:00 |
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cf732a3bcc
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saving work yet again to be extra sure
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2020-09-10 16:03:04 +01:00 |
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65841e4f5b
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saving recovered combining_dfs_plotting.R after editing
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2020-09-10 15:52:22 +01:00 |
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68050a93b4
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move combining_dfs_plotting.R
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2020-09-10 15:36:17 +01:00 |
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fdecc944fc
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re-adding deleted combining_dfs_plotting.R
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2020-09-10 15:28:10 +01:00 |
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d43ecfa1dc
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updated gitignore and saving workk
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2020-09-10 14:45:10 +01:00 |
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1708194912
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added boxplots and stats for other numerical params
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2020-09-10 14:09:40 +01:00 |
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fc47c58f91
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saving work after correlation plots
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2020-09-09 20:56:07 +01:00 |
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9bee97052e
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added correlation plots
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2020-09-09 20:48:21 +01:00 |
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f3f86d6651
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renamed file
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2020-09-09 19:11:06 +01:00 |
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2c2c2c1a60
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regenerated combined_or figure with correct muts
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2020-09-09 19:03:52 +01:00 |
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f85b1bd902
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script to generate combined ps plot wit af and or
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2020-09-09 18:57:28 +01:00 |
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e570454cf2
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saving work
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2020-09-09 18:56:59 +01:00 |
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5025e47983
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renamed lineage_dist
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2020-09-09 17:34:32 +01:00 |
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f424f4e2d6
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corrected subcols_axis name in sucols_all_PS
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2020-09-09 13:36:37 +01:00 |
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080cd6375d
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lineage dist plots combined generated
Please enter the commit message for your changes. Lines starting
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2020-09-09 13:18:57 +01:00 |
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19a984f228
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generated lineage dist plots combined. needs tweaking
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2020-09-09 12:53:53 +01:00 |
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31b98fb3d3
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plotting script with resolved gene metadata
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2020-09-09 12:00:42 +01:00 |
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774b34ef00
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updated dir.R
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2020-09-09 11:45:09 +01:00 |
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09e4f7bfbd
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add dirs and resolving_ambiguous_muts
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2020-09-09 11:36:40 +01:00 |
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b7c7ffc018
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`resolved ambiguous muts and generated clean output. Also seaprated dir.R
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2020-09-09 11:26:13 +01:00 |
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46b43cf261
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changing category of ambiguous muts
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2020-09-08 18:51:03 +01:00 |
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eb5491aad9
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outputting revised all params file
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2020-09-08 17:52:45 +01:00 |
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42986bb119
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hopefully finally sorted data merges!
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2020-09-08 17:46:52 +01:00 |
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fe49a45447
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various changes
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2020-09-08 17:13:02 +01:00 |
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5d9561f88a
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trying other num param plots
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2020-09-07 17:17:56 +01:00 |
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648be02665
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ks test script added
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2020-09-07 15:27:53 +01:00 |
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b4affa0c94
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Combining dfs for PS and lig in one
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2020-09-07 14:05:46 +01:00 |
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2ef767f046
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lineage barplot script
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2020-09-07 11:29:28 +01:00 |
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7460c7c97f
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updated combining_two_df.R for plots
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2020-09-04 22:43:30 +01:00 |
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dd1158a66c
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script to plot lineage dist plots
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2020-09-04 22:40:49 +01:00 |
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645868ea27
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adding missing mutation col in combining_dfs
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2020-09-04 21:04:18 +01:00 |
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ddefcd7841
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resolving missing mutation info in combining script
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2020-09-04 20:56:16 +01:00 |
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bba3487829
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added running scripts doc
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2020-08-26 17:20:01 +01:00 |
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3f8d6695a4
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all barplots generated for ps and lig
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2020-08-26 17:18:45 +01:00 |
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0220960975
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reflected change in running_scripts doc
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2020-08-26 16:41:10 +01:00 |
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89e881b5d4
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renamed file to reflect sucols_axis is commons script sourced by ps and lig plots
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2020-08-26 16:40:36 +01:00 |
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0e3f9e584b
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sorted subcols_axis script to generate correct axis cols for both PS and lig plots
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2020-08-26 16:39:10 +01:00 |
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482eeadb9a
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generated subcolour bps for PS
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2020-08-26 12:45:09 +01:00 |
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ed739aeb71
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sourcing plotting_data for subcols_axis_PS
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2020-08-26 12:07:04 +01:00 |
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b754f26f9b
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added ligand df in plotting
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2020-08-26 10:02:44 +01:00 |
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73877942f4
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added instructions on running plot scripts
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2020-08-24 14:38:45 +01:00 |
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75273cebbf
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generated replaced Bfactor pdbs
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2020-08-24 14:37:28 +01:00 |
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54f9fd073b
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rectified mcsm_mean_stability to avereage on raw values and then scale
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2020-08-24 13:04:25 +01:00 |
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d76345c3de
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saving work to check merge conflicts resolved
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2020-08-24 11:20:58 +01:00 |
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