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a3e5283a9b
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generated ggpairs plots finally
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2022-08-15 19:05:22 +01:00 |
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b68841b337
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saving work
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2022-08-14 22:57:23 +01:00 |
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7c40e13771
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dadded v2 of barplot layput
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2022-08-14 22:56:08 +01:00 |
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da8f8d90d4
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removed setDT and replaced with dplyr alt in position_count_bp.R
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2022-08-14 14:19:09 +01:00 |
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65d697d3a2
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saving work
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2022-08-14 12:35:46 +01:00 |
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fcbf87705f
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gg_pairs_all: output to a png in /tmp
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2022-08-14 12:20:29 +01:00 |
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2acea43bcf
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added maf column in appendix_tables
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2022-08-14 12:18:29 +01:00 |
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6f354ab390
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oops!
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2022-08-14 12:17:42 +01:00 |
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c09d7530c9
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added ORandSNP writing results
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2022-08-13 21:19:40 +01:00 |
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4609757efb
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added appendix tables script
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2022-08-13 21:19:19 +01:00 |
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d984d283c5
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generated embb lineage plots
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2022-08-13 21:18:01 +01:00 |
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c8f3ddf892
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colour changes
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2022-08-13 15:49:24 +01:00 |
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365c322953
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added fd corrected p-values for ks stats
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2022-08-13 14:54:51 +01:00 |
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f5f1e388c3
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modified ks test to output all stats needed in one script
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2022-08-12 14:35:03 +01:00 |
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22be845e1f
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added ggpairs code
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2022-08-12 10:04:35 +01:00 |
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1b08080078
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added prominent_effects.R
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2022-08-11 21:07:55 +01:00 |
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b32398d16f
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output corr plots with log10 labels
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2022-08-11 21:03:27 +01:00 |
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3d3e74306c
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added log10 to corr plot labels
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2022-08-11 21:01:16 +01:00 |
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b302daaa60
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rearranged corr plot cols and also added example for ggpairs
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2022-08-11 20:56:34 +01:00 |
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842efe4409
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created prominent effect calcualtions
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2022-08-10 20:02:43 +01:00 |
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ccc7dd7bf2
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added csv for all colnames
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2022-08-10 14:08:23 +01:00 |
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2f7558a883
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aadded colnames to plot as names
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2022-08-10 14:08:23 +01:00 |
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f6a3b7f066
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added lineage plots in one
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2022-08-10 12:58:58 +01:00 |
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a6d93b3fa8
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starting corr plots
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2022-08-09 21:55:24 +01:00 |
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cd86fcf8e8
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added separate scripts for layout for convinience
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2022-08-09 21:47:24 +01:00 |
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5ef9eb8826
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saving
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2022-08-09 19:58:32 +01:00 |
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faf9ab9707
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various
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2022-08-09 19:56:47 +01:00 |
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94454d6fba
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added combined lineage plot
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2022-08-09 19:34:07 +01:00 |
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5bdfd03443
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refactored dm om plots and generated the final layout
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2022-08-08 16:46:27 +01:00 |
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0234a8f77b
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more plot modifications dm and om plots mainly
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2022-08-08 15:32:16 +01:00 |
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4e6f10d1ba
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added outcome col to dm_om data
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2022-08-07 11:21:25 +01:00 |
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54b3dd9d42
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various refactoring
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2022-08-06 18:49:00 +01:00 |
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f0a9eb4eec
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aadded complete obs count for corr plots and added placeholder for mcsm-na
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2022-08-06 14:31:18 +01:00 |
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f194b5ea4f
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added corr plot TODO for lineage counts
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2022-08-06 13:30:41 +01:00 |
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0e777108a9
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saving and strating to write
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2022-08-06 13:09:26 +01:00 |
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569e372476
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agenerated corr plots with MAF and provean
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2022-08-06 13:08:42 +01:00 |
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fe9c3f8afe
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added dm_om_plots.R
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2022-08-05 19:59:07 +01:00 |
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05ab89ec09
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git trimmed downthe dm_om_data.R
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2022-08-05 14:36:02 +01:00 |
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c0f59bc9c9
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breakage
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2022-08-05 12:45:16 +01:00 |
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14f8f5d6d4
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generated lineage barplots and corr plots for conservation
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2022-08-04 19:48:09 +01:00 |
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424c1d184d
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added linage barplots
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2022-08-04 19:29:20 +01:00 |
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7f9facc1e6
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moved old corr files
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2022-08-04 19:28:39 +01:00 |
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dab8294a01
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renamed folder
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2022-08-04 18:52:03 +01:00 |
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ad2e538ec2
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separated plotting_thesis for generating plots
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2022-08-04 18:47:18 +01:00 |
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