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9597997741
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saving predictions script
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2020-09-30 14:09:08 +01:00 |
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8a6c7968f5
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added predictions for ps and lig and output to results
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2020-09-30 13:12:05 +01:00 |
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a77b472dfa
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added prediction.R to do logistic regression
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2020-09-30 10:04:49 +01:00 |
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d2093e7a4c
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added ../data_extraction_epistasis.py for getting list for epistasis work
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2020-09-29 16:09:54 +01:00 |
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81796df71a
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added corr_data.R corr_PS_LIG_all.R corr_PS_LIG_v2.R
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2020-09-29 16:08:25 +01:00 |
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c58fa8cd4d
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added dist_plot.R to generate plots for writing results
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2020-09-23 19:24:42 +01:00 |
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48050752db
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added more analysis in extreme_muts.R to be tidied later
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2020-09-23 19:23:34 +01:00 |
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a3aab4556a
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added fold and duet agreement to extreme_muts.R
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2020-09-23 11:20:22 +01:00 |
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6d08b646fc
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added foldx scaled and foldx outcome to plotting_data.R
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2020-09-23 11:12:41 +01:00 |
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5579e9527b
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updated extreme_muts.R with number of budding hotspots and mult muts numbers
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2020-09-23 11:02:13 +01:00 |
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tgttunstall
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f7280ceada
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Update README.md
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2020-09-21 18:11:24 +01:00 |
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tgttunstall
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807876d919
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Update README.md
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2020-09-21 18:11:10 +01:00 |
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tgttunstall
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baedea8c5b
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Update README.md
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2020-09-21 18:09:55 +01:00 |
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tgttunstall
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0eca5cf859
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Update README.md
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2020-09-21 18:08:49 +01:00 |
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tgttunstall
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ac3c8a8086
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Update README.md
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2020-09-21 18:07:58 +01:00 |
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5ceea2e7b7
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updated gitignore for more tidying
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2020-09-21 17:58:51 +01:00 |
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63fa0c596a
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updated gitignore to tidyup
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2020-09-21 17:54:54 +01:00 |
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7239ab220b
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remove unneeded dir
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2020-09-21 17:49:19 +01:00 |
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2297617af2
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added ks_test_all_PS.R, ks_test_dr_PS.R, ks_test_dr_others_PS.R
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2020-09-21 17:46:22 +01:00 |
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be8fa7e639
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saving combined bubble plot with labels
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2020-09-18 18:19:55 +01:00 |
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7e8d5c869e
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updated .gitignore to include .RData
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2020-09-18 18:10:23 +01:00 |
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edabe0d776
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added script basic_barplots_combined.R to combine basic barplots for PS and lig
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2020-09-18 18:09:24 +01:00 |
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771995d1ab
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saving work
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2020-09-18 18:07:48 +01:00 |
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093ae0d832
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added ggcorr all plot figure for supp
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2020-09-18 12:46:12 +01:00 |
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369c906a33
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added ggcorr plots combined for all params
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2020-09-18 11:56:19 +01:00 |
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24b1cc2440
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saving work
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2020-09-18 11:55:08 +01:00 |
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5e1c920a0c
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updated Header file and saving work
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2020-09-17 20:12:08 +01:00 |
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b8575c6e69
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logo_combined.R, outputs logo plot with multiple mutations and log_or
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2020-09-17 20:01:57 +01:00 |
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40e4ddd70a
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minor tweaks in logo and corr plots
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2020-09-17 20:00:34 +01:00 |
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8ddca4a8b1
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updated corr plots to show points with no colours
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2020-09-17 17:17:11 +01:00 |
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883207bc4b
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updated corr_PS_LIG.R to output both styles of corr plots
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2020-09-17 17:04:03 +01:00 |
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ea5d5bda44
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renamed corr_plot scripts
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2020-09-17 16:38:40 +01:00 |
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f0ee1ff6c9
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updated plot name in corr_plots_foldx.R
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2020-09-17 16:36:45 +01:00 |
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1b5280145b
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renamed file to denote corr adjusted and plain
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2020-09-17 16:35:35 +01:00 |
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fb0646373b
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added scratch_plots/ggpairs_test.R to play with ggally for future
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2020-09-17 15:32:40 +01:00 |
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5f335a5051
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added plotting/corr_plots_style2.Radded my version of pairs.panel with lower panel turned off. Also added new script for corr plots using my version of pairs.panel
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2020-09-17 15:31:37 +01:00 |
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63e04ae600
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saving work
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2020-09-17 15:29:17 +01:00 |
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375cdc2068
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added new layput for dm_om and facet_lineage plot
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2020-09-17 14:01:04 +01:00 |
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a5b03e53e8
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updated with two outputs: labelled and unlabelled
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2020-09-16 15:37:56 +01:00 |
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351e472e73
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renaming and moving files
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2020-09-16 14:57:51 +01:00 |
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b36bfc9e9d
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renamed file in scratch plot/
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2020-09-16 14:53:53 +01:00 |
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25f2f9e4a2
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playing with lineage_dist_dm_om
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2020-09-16 13:23:49 +01:00 |
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ba02107e23
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added dir scratch_plots/ to practice extra plots
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2020-09-16 11:51:17 +01:00 |
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0f6bf3875d
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updated plotting_data.R with stability colours as variables
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2020-09-16 11:47:38 +01:00 |
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83deb64e1c
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saving work
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2020-09-15 13:34:26 +01:00 |
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445f3e2047
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updated distribution scripts to try adding points
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2020-09-15 13:33:28 +01:00 |
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44d1f64e88
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updating lineage_country.R with different data slices
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2020-09-15 13:14:33 +01:00 |
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645827570f
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added ggridges_lineage_country.R for dist by country
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2020-09-15 12:50:25 +01:00 |
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ee69445f11
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updated gitignore to include TO_DO/
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2020-09-14 17:26:28 +01:00 |
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09e20cf7b3
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added mutate.py and run_mutate.sh to create MSA aligbments for mutant sequences required to generate logoplot from sequence in R
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2020-09-14 15:17:49 +01:00 |
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