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741aad3dd1
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added nsSNPs to lineage dist plots
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2022-08-25 22:17:41 +01:00 |
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ca619bc662
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fix directory assumption
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2022-08-25 18:02:25 +01:00 |
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afa9166ca8
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things
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2022-08-25 17:58:04 +01:00 |
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cd76a4b919
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things
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2022-08-25 17:58:04 +01:00 |
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3b77b4b611
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stuff
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2022-08-25 17:58:04 +01:00 |
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e4e8bd7278
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added colors for tiles for gid plots and appendix tables
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2022-08-25 17:50:49 +01:00 |
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ac72634b48
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added dir for embb for consistency and checks and moved others to version1
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2022-08-25 10:19:25 +01:00 |
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19b820e316
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corrected the pe colour mapping
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2022-08-24 20:55:36 +01:00 |
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11b936f09b
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added more scripts
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2022-08-24 20:04:29 +01:00 |
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9aed99e805
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various
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2022-08-23 21:54:16 +01:00 |
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0284122ef2
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aadded replace bfactor for na
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2022-08-23 16:31:17 +01:00 |
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23b4f06017
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added scripts
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2022-08-23 16:30:50 +01:00 |
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dd69da01f6
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get_plotting_dfs
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2022-08-23 15:35:47 +01:00 |
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ee70845939
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stuff
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2022-08-23 15:21:15 +01:00 |
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a2e7e6c26b
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plerts
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2022-08-22 23:11:42 +01:00 |
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3d817fde0c
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more plot files
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2022-08-22 22:57:56 +01:00 |
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04253b961f
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lots of per-plot configs
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2022-08-22 21:56:13 +01:00 |
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13999a477d
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fixed source to contain plotting cols and pos_count correctly
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2022-08-22 14:33:06 +01:00 |
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4147a6b90f
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a massive waste of time
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2022-08-22 13:05:53 +01:00 |
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8d6c148fff
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renamed 2 to _v2
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2022-08-22 11:43:13 +01:00 |
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802d6f8495
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renamed 2 to _v2
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2022-08-22 11:41:42 +01:00 |
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c9d7ea9fad
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AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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2022-08-17 18:42:26 +01:00 |
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cd9b1ad245
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stability and cons revised bp out
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2022-08-16 14:45:31 +01:00 |
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f244741e83
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added Lin_count.R
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2022-08-15 21:29:32 +01:00 |
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2e29cf8011
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config files
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2022-08-15 20:39:59 +01:00 |
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0cc7a8fcae
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config: add tile stuff for all targets. Other functions: many rewrites!
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2022-08-15 20:39:59 +01:00 |
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a3e5283a9b
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generated ggpairs plots finally
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2022-08-15 19:05:22 +01:00 |
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b68841b337
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saving work
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2022-08-14 22:57:23 +01:00 |
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7c40e13771
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dadded v2 of barplot layput
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2022-08-14 22:56:08 +01:00 |
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da8f8d90d4
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removed setDT and replaced with dplyr alt in position_count_bp.R
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2022-08-14 14:19:09 +01:00 |
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65d697d3a2
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saving work
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2022-08-14 12:35:46 +01:00 |
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939528024a
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turn off thing
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2022-08-14 12:35:09 +01:00 |
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fcbf87705f
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gg_pairs_all: output to a png in /tmp
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2022-08-14 12:20:29 +01:00 |
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2acea43bcf
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added maf column in appendix_tables
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2022-08-14 12:18:29 +01:00 |
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6f354ab390
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oops!
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2022-08-14 12:17:42 +01:00 |
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c09d7530c9
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added ORandSNP writing results
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2022-08-13 21:19:40 +01:00 |
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4609757efb
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added appendix tables script
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2022-08-13 21:19:19 +01:00 |
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d984d283c5
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generated embb lineage plots
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2022-08-13 21:18:01 +01:00 |
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c8f3ddf892
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colour changes
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2022-08-13 15:49:24 +01:00 |
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c6a720770d
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some stuff
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2022-08-13 15:47:41 +01:00 |
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365c322953
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added fd corrected p-values for ks stats
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2022-08-13 14:54:51 +01:00 |
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f5f1e388c3
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modified ks test to output all stats needed in one script
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2022-08-12 14:35:03 +01:00 |
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22be845e1f
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added ggpairs code
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2022-08-12 10:04:35 +01:00 |
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318941e91b
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older file renamed for prominent effects
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2022-08-11 21:09:48 +01:00 |
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d6766d9d9c
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added plotting_colnames.R in scripts/plotting
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2022-08-11 21:08:54 +01:00 |
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1b08080078
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added prominent_effects.R
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2022-08-11 21:07:55 +01:00 |
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b32398d16f
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output corr plots with log10 labels
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2022-08-11 21:03:27 +01:00 |
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3d3e74306c
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added log10 to corr plot labels
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2022-08-11 21:01:16 +01:00 |
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b302daaa60
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rearranged corr plot cols and also added example for ggpairs
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2022-08-11 20:56:34 +01:00 |
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fdb3f00503
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added dist_mutation_to_na2.pl script from UQ to calculate dist to na
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2022-08-11 10:09:33 +01:00 |
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