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bb022470d9
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stuff
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2022-09-05 19:27:17 +01:00 |
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f949592dd8
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added consurf_colours_no_isd to ensure consurf plots are not messed up in the absesnce of 0 categ
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2022-09-05 16:01:21 +01:00 |
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2cec743ae0
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added pnca plot dir to generate plots that weren#t covered in the paper
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2022-09-05 14:02:04 +01:00 |
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1dacebbaf6
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renamed files for lineage_diff_sensitivites.R
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2022-09-05 13:19:06 +01:00 |
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69a0da0a59
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added script for lineage diff sensitivities
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2022-09-04 21:36:49 +01:00 |
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c2b46286d8
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added rpob ks test script
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2022-08-31 22:03:39 +01:00 |
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bc9d1a7149
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added embb plotting scripts
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2022-08-31 22:03:07 +01:00 |
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a5d22540e1
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renamed count_vars_ML previous version as such
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2022-08-31 22:02:46 +01:00 |
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d7f348318c
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removed template files from rpob
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2022-08-29 23:28:53 +01:00 |
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f39bbdcce7
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added katg and rpob files
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2022-08-29 23:27:37 +01:00 |
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7c2e4b898e
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added rpob plot scripts
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2022-08-29 23:27:13 +01:00 |
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6441be21ab
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added katg tables
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2022-08-28 22:31:29 +01:00 |
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d5da923a74
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stuff
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2022-08-28 13:17:43 +01:00 |
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7bed6a1e22
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added all scripts
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2022-08-27 23:12:12 +01:00 |
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da8a1069a8
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saving work
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2022-08-27 23:12:12 +01:00 |
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c3067b9176
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gg pairs fixup for alr
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2022-08-27 17:15:40 +01:00 |
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927ab850a8
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added DCS to alr config
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2022-08-27 16:36:49 +01:00 |
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c6f5a446c3
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stuff
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2022-08-27 15:35:48 +01:00 |
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2cbc460f87
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added output tables with active site
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2022-08-26 21:50:33 +01:00 |
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f290d8ec9e
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addded appendix tables and frequent muts
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2022-08-25 22:21:05 +01:00 |
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741aad3dd1
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added nsSNPs to lineage dist plots
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2022-08-25 22:17:41 +01:00 |
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e4e8bd7278
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added colors for tiles for gid plots and appendix tables
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2022-08-25 17:50:49 +01:00 |
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ac72634b48
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added dir for embb for consistency and checks and moved others to version1
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2022-08-25 10:19:25 +01:00 |
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19b820e316
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corrected the pe colour mapping
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2022-08-24 20:55:36 +01:00 |
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11b936f09b
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added more scripts
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2022-08-24 20:04:29 +01:00 |
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9aed99e805
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various
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2022-08-23 21:54:16 +01:00 |
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23b4f06017
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added scripts
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2022-08-23 16:30:50 +01:00 |
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a2e7e6c26b
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plerts
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2022-08-22 23:11:42 +01:00 |
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3d817fde0c
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more plot files
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2022-08-22 22:57:56 +01:00 |
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04253b961f
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lots of per-plot configs
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2022-08-22 21:56:13 +01:00 |
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13999a477d
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fixed source to contain plotting cols and pos_count correctly
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2022-08-22 14:33:06 +01:00 |
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8d6c148fff
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renamed 2 to _v2
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2022-08-22 11:43:13 +01:00 |
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802d6f8495
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renamed 2 to _v2
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2022-08-22 11:41:42 +01:00 |
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c9d7ea9fad
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AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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2022-08-17 18:42:26 +01:00 |
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cd9b1ad245
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stability and cons revised bp out
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2022-08-16 14:45:31 +01:00 |
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f244741e83
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added Lin_count.R
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2022-08-15 21:29:32 +01:00 |
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a3e5283a9b
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generated ggpairs plots finally
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2022-08-15 19:05:22 +01:00 |
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b68841b337
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saving work
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2022-08-14 22:57:23 +01:00 |
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7c40e13771
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dadded v2 of barplot layput
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2022-08-14 22:56:08 +01:00 |
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da8f8d90d4
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removed setDT and replaced with dplyr alt in position_count_bp.R
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2022-08-14 14:19:09 +01:00 |
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65d697d3a2
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saving work
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2022-08-14 12:35:46 +01:00 |
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fcbf87705f
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gg_pairs_all: output to a png in /tmp
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2022-08-14 12:20:29 +01:00 |
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2acea43bcf
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added maf column in appendix_tables
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2022-08-14 12:18:29 +01:00 |
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6f354ab390
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oops!
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2022-08-14 12:17:42 +01:00 |
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c09d7530c9
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added ORandSNP writing results
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2022-08-13 21:19:40 +01:00 |
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4609757efb
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added appendix tables script
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2022-08-13 21:19:19 +01:00 |
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d984d283c5
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generated embb lineage plots
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2022-08-13 21:18:01 +01:00 |
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c8f3ddf892
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colour changes
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2022-08-13 15:49:24 +01:00 |
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365c322953
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added fd corrected p-values for ks stats
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2022-08-13 14:54:51 +01:00 |
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f5f1e388c3
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modified ks test to output all stats needed in one script
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2022-08-12 14:35:03 +01:00 |
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