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0e777108a9
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saving and strating to write
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2022-08-06 13:09:26 +01:00 |
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569e372476
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agenerated corr plots with MAF and provean
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2022-08-06 13:08:42 +01:00 |
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fe9c3f8afe
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added dm_om_plots.R
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2022-08-05 19:59:07 +01:00 |
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33925dafe9
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things
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2022-08-05 16:13:57 +01:00 |
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6cb9998c4c
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added the script to redundant
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2022-08-05 14:45:33 +01:00 |
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164113f665
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moved dm_om_data.R the script version to redundant and the function version has been trimmed to for readability
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2022-08-05 14:44:36 +01:00 |
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05ab89ec09
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git trimmed downthe dm_om_data.R
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2022-08-05 14:36:02 +01:00 |
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c0f59bc9c9
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breakage
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2022-08-05 12:45:16 +01:00 |
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14f8f5d6d4
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generated lineage barplots and corr plots for conservation
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2022-08-04 19:48:09 +01:00 |
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424c1d184d
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added linage barplots
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2022-08-04 19:29:20 +01:00 |
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7f9facc1e6
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moved old corr files
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2022-08-04 19:28:39 +01:00 |
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dab8294a01
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renamed folder
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2022-08-04 18:52:03 +01:00 |
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ad2e538ec2
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separated plotting_thesis for generating plots
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2022-08-04 18:47:18 +01:00 |
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599cd7493f
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buggy bugs that bug me
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2022-08-04 15:18:23 +01:00 |
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e1b8e103ea
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saving from my panino, made lineage dist plots
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2022-08-04 13:47:24 +01:00 |
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bcba0c359e
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moved code for structure figure to sep sir
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2022-08-03 21:33:19 +01:00 |
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aabe466599
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added plots for thesis
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2022-08-03 21:32:55 +01:00 |
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f2709f3992
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added replace b factor scripts for lig affinity and ppi2
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2022-08-02 20:30:43 +01:00 |
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87a3d7acf2
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generated simple affinity plots for embb
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2022-08-02 20:29:31 +01:00 |
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214e9232c6
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still trying affinity phew
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2022-08-02 16:55:31 +01:00 |
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d94aa10c9b
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saving work
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2022-08-01 21:44:11 +01:00 |
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66337c289c
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added scripts to generate mean stability for rpob
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2022-08-01 21:41:55 +01:00 |
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ccc877e811
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attempting affintiy stuff
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2022-08-01 21:41:02 +01:00 |
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0d8979dfcb
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separted cols
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2022-08-01 14:09:46 +01:00 |
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e750ee59aa
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saving
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2022-08-01 13:41:43 +01:00 |
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79c261963b
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sorting the ensemble and priority for ligand affinity
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2022-08-01 13:36:05 +01:00 |
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f3710bfaf5
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added mcsm_mean_affinity_ensemble.R and replaceBfactor_pdb_stability.R
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2022-07-31 19:25:28 +01:00 |
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1bf66b145c
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separating mcsm_mean_stability_ensemble from combined script
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2022-07-31 19:24:35 +01:00 |
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06e5363112
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added scriptaa mcsm_mean_stability_ensemble.R to get ensemble of averages across predictors for stability and affinity
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2022-07-31 16:29:47 +01:00 |
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4de1e800ec
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moved mut_landscape files to plotting
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2022-07-31 12:01:56 +01:00 |
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8079dd7b6c
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reran to generate merged_df3 with correct dst for dst muts. modified combining_dfs_plotting.R
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2022-07-08 21:33:57 +01:00 |
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b8653c6afe
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ML scripts: {'n_jobs': os.cpu_count() }
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2022-07-02 10:22:07 +01:00 |
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cbfa9ff31b
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lineage plots: be a function and then run over all pairs
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2022-06-29 19:24:47 +01:00 |
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8965bee5d6
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LINEAGE2 plots: p value stars
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2022-06-29 17:18:55 +01:00 |
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c85c965c3e
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added TODO for lineage2.R
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2022-06-29 10:26:08 +01:00 |
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aff7247e3b
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really!?!?!?!?
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2022-06-28 21:52:04 +01:00 |
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478df927cc
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horrible lineage analysis hell
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2022-06-28 21:51:02 +01:00 |
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f355846dae
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added active site indication for merged_dfs in count_vars_ML.R and also added 'gene_name' in combining_dfs.py
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2022-06-15 18:36:28 +01:00 |
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2274f01f23
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combined msa and wt seq into 1 list so only list is passed as an arg for plotting ED plots
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2022-02-15 08:31:58 +00:00 |
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18e1f14455
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saving changes
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2022-02-14 11:14:40 +00:00 |
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6ffb084546
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added hbond residues in config for all genes
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2022-02-09 15:59:18 +00:00 |
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7a14655ecb
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added active site positions to all config.R
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2022-02-03 18:02:27 +00:00 |
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04cddbbf2b
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minor formatting, taken a line off the barplots_subcolours_aa_PS.R
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2022-02-02 19:01:13 +00:00 |
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3e5191f5c6
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attempting to visualise consurf plot along with highlighting active site pos
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2022-02-02 19:00:23 +00:00 |
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9c3818fd98
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added NOTE to the barplots_subcolours_aa_PS.R as I am trying it for other plots
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2022-02-02 18:59:33 +00:00 |
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3d45780c1a
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updated docs for dm_om_data.R
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2022-02-01 16:23:03 +00:00 |
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e795c00831
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added gene conditions to test_dm_om_data.R
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2022-02-01 10:54:10 +00:00 |
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b2e035d9bc
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moved old dm_om_data_nf to redundant/
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2022-01-31 17:52:29 +00:00 |
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ef1fb96b88
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tested dm_om_data function with alr gene to make sure valid dfs are being returned
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2022-01-31 17:50:12 +00:00 |
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a287b801f7
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saving before commiting
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2022-01-31 17:36:00 +00:00 |
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