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myshiny
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wholesale change for Header_TT.R location
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2022-01-26 11:39:03 +00:00 |
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redundant
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moved old dm_om_data_nf to redundant/
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2022-01-31 17:52:29 +00:00 |
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scratch_plots
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wholesale change for Header_TT.R location
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2022-01-26 11:39:03 +00:00 |
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barplots_subcolours.R
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wholesale change for Header_TT.R location
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2022-01-26 11:39:03 +00:00 |
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barplots_subcolours_aa_combined.R
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changing labels in graphs for frontiers journal
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2020-10-09 13:10:08 +01:00 |
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barplots_subcolours_aa_LIG.R
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wholesale change for Header_TT.R location
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2022-01-26 11:39:03 +00:00 |
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barplots_subcolours_aa_PS.R
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added hbond residues in config for all genes
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2022-02-09 15:59:18 +00:00 |
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basic_barplots.R
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wholesale change for Header_TT.R location
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2022-01-26 11:39:03 +00:00 |
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basic_barplots_combined.R
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handled rpob 5uhc position offset in mcsm_ppi2
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2022-01-04 10:45:29 +00:00 |
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corr_adjusted_PS_LIG.R
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wholesale change for Header_TT.R location
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2022-01-26 11:39:03 +00:00 |
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corr_plots.R
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wholesale change for Header_TT.R location
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2022-01-26 11:39:03 +00:00 |
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dirs.R
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handled rpob 5uhc position offset in mcsm_ppi2
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2022-01-04 10:45:29 +00:00 |
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dist_plots_check.R
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wholesale change for Header_TT.R location
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2022-01-26 11:39:03 +00:00 |
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dm_om_data.R
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tested dm_om_data function with alr gene to make sure valid dfs are being returned
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2022-01-31 17:50:12 +00:00 |
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extreme_muts.R
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wholesale change for Header_TT.R location
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2022-01-26 11:39:03 +00:00 |
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get_plotting_dfs.R
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reran to generate merged_df3 with correct dst for dst muts. modified combining_dfs_plotting.R
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2022-07-08 21:33:57 +01:00 |
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get_plotting_dfs_with_lig.R
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wholesale change for Header_TT.R location
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2022-01-26 11:39:03 +00:00 |
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ggcorr_all_PS_LIG.R
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wholesale change for Header_TT.R location
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2022-01-26 11:39:03 +00:00 |
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hist_af_or_base.R
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wholesale change for Header_TT.R location
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2022-01-26 11:39:03 +00:00 |
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hist_af_or_combined.R
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wholesale change for Header_TT.R location
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2022-01-26 11:39:03 +00:00 |
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legend_adjustment.R
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handled rpob 5uhc position offset in mcsm_ppi2
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2022-01-04 10:45:29 +00:00 |
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LINEAGE.R
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added TODO for lineage2.R
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2022-06-29 10:26:08 +01:00 |
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LINEAGE2.R
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lineage plots: be a function and then run over all pairs
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2022-06-29 19:24:47 +01:00 |
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lineage_basic_barplot.R
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wholesale change for Header_TT.R location
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2022-01-26 11:39:03 +00:00 |
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lineage_basic_barplots_combined.R
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wholesale change for Header_TT.R location
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2022-01-26 11:39:03 +00:00 |
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lineage_data.R
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added foldx_scaled and deepddg_scaled values added to combine_df.py and also used that script to merge all the dfs so that merged_df2 and merged_df3 are infact what we need for downstream processing
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2021-09-10 16:58:36 +01:00 |
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lineage_dist_combined_PS.R
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wholesale change for Header_TT.R location
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2022-01-26 11:39:03 +00:00 |
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lineage_dist_dm_om_combined_PS.R
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wholesale change for Header_TT.R location
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2022-01-26 11:39:03 +00:00 |
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lineage_dist_plots.R
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wholesale change for Header_TT.R location
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2022-01-26 11:39:03 +00:00 |
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lineage_plots_multipage.R
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ML scripts: {'n_jobs': os.cpu_count() }
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2022-07-02 10:22:07 +01:00 |
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logo_data_msa.R
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combined msa and wt seq into 1 list so only list is passed as an arg for plotting ED plots
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2022-02-15 08:31:58 +00:00 |
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logo_plots.R
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wholesale change for Header_TT.R location
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2022-01-26 11:39:03 +00:00 |
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mcsm_affinity_data_only.R
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added scripts to generate mean stability for rpob
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2022-08-01 21:41:55 +01:00 |
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mcsm_mean_affinity_ensemble.R
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attempting affintiy stuff
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2022-08-01 21:41:02 +01:00 |
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mcsm_mean_stability.R
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wholesale change for Header_TT.R location
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2022-01-26 11:39:03 +00:00 |
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mcsm_mean_stability_ensemble.R
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attempting affintiy stuff
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2022-08-01 21:41:02 +01:00 |
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mcsm_mean_stability_ensemble_5uhc_rpob.R
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added scripts to generate mean stability for rpob
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2022-08-01 21:41:55 +01:00 |
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mut_landscape.R
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moved mut_landscape files to plotting
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2022-07-31 12:01:56 +01:00 |
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mut_landscape_5uhc_rpob.R
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moved mut_landscape files to plotting
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2022-07-31 12:01:56 +01:00 |
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notes
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updated notes with supp table colnames
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2020-09-10 20:15:00 +01:00 |
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opp_mcsm_muts.R
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handled rpob 5uhc position offset in mcsm_ppi2
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2022-01-04 10:45:29 +00:00 |
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or_plots_combined.R
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wholesale change for Header_TT.R location
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2022-01-26 11:39:03 +00:00 |
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other_plots_combined.R
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wholesale change for Header_TT.R location
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2022-01-26 11:39:03 +00:00 |
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other_plots_data.R
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repurposing corr_data.R into a function to allow required params to be passed in
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2022-01-29 17:24:15 +00:00 |
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output_tables.R
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wholesale change for Header_TT.R location
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2022-01-26 11:39:03 +00:00 |
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ps_plots_combined.R
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wholesale change for Header_TT.R location
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2022-01-26 11:39:03 +00:00 |
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replaceBfactor_pdb.R
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separating mcsm_mean_stability_ensemble from combined script
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2022-07-31 19:24:35 +01:00 |
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replaceBfactor_pdb_stability.R
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added mcsm_mean_affinity_ensemble.R and replaceBfactor_pdb_stability.R
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2022-07-31 19:25:28 +01:00 |
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replaceBfactor_pdb_stability_5uhc_rpob.R
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saving work
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2022-08-01 21:44:11 +01:00 |
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resolving_ambiguous_muts.R
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handled rpob 5uhc position offset in mcsm_ppi2
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2022-01-04 10:45:29 +00:00 |
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running_plot_scripts
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lineage dist plots combined generated
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2020-09-09 13:18:57 +01:00 |
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running_plotting_scripts.txt
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updated notes
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2021-09-07 11:18:10 +01:00 |
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subcols_axis.R
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generated pncA plot for poster for ps_combined
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2021-07-07 11:38:07 +01:00 |
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TESTING_PLOTS.R
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wholesale change for Header_TT.R location
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2022-01-26 11:39:03 +00:00 |
