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0191ee3493
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logoplot from df and seqs with custom height
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2020-03-29 17:11:17 +01:00 |
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4f50786c6f
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added R header file to base dir to allow general access by R scripts
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2020-03-28 17:56:39 +00:00 |
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745dd343fd
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tidied combining plot scripts
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2020-03-28 17:54:45 +00:00 |
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4569e704c1
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added mutate.py script for msa generation
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2020-03-27 17:11:16 +00:00 |
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c2a4e1b0ec
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saving work for the day
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2020-03-27 17:08:33 +00:00 |
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aad225b3d4
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changed filename to the new combined output (mcsm+struct params)
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2020-03-27 12:43:48 +00:00 |
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e598f7d5dd
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combining mcsm and struct params
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2020-03-27 12:39:02 +00:00 |
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0eaff73114
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tidy code and saving work for the day
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2020-03-26 17:58:39 +00:00 |
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f0becbe386
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added script to combined dfs of structural params like kd, dssp & rd
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2020-03-26 17:14:20 +00:00 |
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51a9d814c2
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changed outcols in dssp and kd outputs
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2020-03-26 17:12:59 +00:00 |
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dd2e2d03eb
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added residue depth processing to generate df
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2020-03-26 15:44:20 +00:00 |
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a074d29f6e
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tidy code and renamed kd.py to kd_df.py
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2020-03-26 15:43:13 +00:00 |
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73e0029b65
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tidied and updated kd and dssp scripts & generated their respective outputs
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2020-03-25 18:19:23 +00:00 |
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37e1d43b76
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updated kd.py to relfect a merging col for combining num params later
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2020-03-25 15:20:54 +00:00 |
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d44ab57f5a
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output from comb script & electrostatic mut changes calculated
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2020-03-25 13:42:18 +00:00 |
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954eb88c45
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updated combining df scripts for duet & lig
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2020-03-24 18:28:52 +00:00 |
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d81be80305
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minor changes to variable names in .R & .py
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2020-03-24 10:36:51 +00:00 |
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0001c727e0
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renamed files to make more generic
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2020-03-23 18:13:02 +00:00 |
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d29b81a686
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renamed files to make more generic
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2020-03-23 17:48:39 +00:00 |
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8c7efcb276
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fixed bugs and tidy code
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2020-03-23 17:43:06 +00:00 |
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5adef195e0
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delete old file
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2020-03-23 17:40:19 +00:00 |
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f686563c98
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updated pnca_extraction and AF_OR calcs
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2020-03-23 17:36:42 +00:00 |
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53d19d5dd8
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bug fixes and massive clean up of data extraction script
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2020-03-23 13:33:25 +00:00 |
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a5356cf88b
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saving from work
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2020-02-27 15:16:20 +00:00 |
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61f8dc57c9
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renamed file and updated logo plot code
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2020-02-26 12:00:32 +00:00 |
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95f0e28fb2
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added 2 logo plot scripts
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2020-02-25 19:09:43 +00:00 |
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7b393a2b13
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updating mut_seq script
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2020-02-25 18:13:18 +00:00 |
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2805fdda40
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hydrophobicity script
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2020-02-25 10:42:58 +00:00 |
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2ed0df41e2
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remove old surface_res3.py
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2020-02-20 12:23:56 +00:00 |
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26e4652d63
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fixup
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2020-02-20 10:41:49 +00:00 |
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ec25e9fd2d
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adding scripts for struct params
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2020-02-16 15:14:36 +00:00 |
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31dd74d5ac
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remove __pycache__, update .gitignore
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2020-02-16 15:08:45 +00:00 |
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2e8053dc72
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test commit
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2020-02-16 15:00:49 +00:00 |
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f22f674097
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added script to calculate electrostatic changes of mutations
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2020-02-11 15:03:21 +00:00 |
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56e7a96b00
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updated ref dict to inc aa_calcprop
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2020-02-11 15:02:32 +00:00 |
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84389631d5
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saving a and b labels in bubble plot with brackets
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2020-02-02 11:39:35 +00:00 |
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ec6f607655
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added script for KS_test for DUET
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2020-02-02 11:36:17 +00:00 |
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7842d87a0d
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tidy code for lineage_dist_PS
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2020-02-02 11:14:25 +00:00 |
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31383e945b
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tidying script for lineage dist PS and separating KS test results
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2020-02-02 11:11:49 +00:00 |
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8df0491721
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added bubble plot
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2020-02-02 09:17:11 +00:00 |
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12c24d974e
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added script for coloured axis for ligand affinity
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2020-01-31 16:39:22 +00:00 |
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c5d47c1a18
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remove .Rhistory
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2020-01-31 15:35:25 +00:00 |
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340f490d70
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Merge branch 'master' of https://git.tunstall.in/tanu/LSHTM_analysis
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2020-01-31 15:34:58 +00:00 |
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077231b240
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remove .Rhistory
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2020-01-31 15:32:32 +00:00 |
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c73c5571a7
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added subaxis plots for PS and lig separately
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2020-01-31 15:30:08 +00:00 |
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29022c5462
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saving previous stuff from work
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2020-01-30 08:26:21 +00:00 |
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c10d54f104
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tidy script for data extraction
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2020-01-28 11:53:10 +00:00 |
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366bb3960d
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Merge branch 'master' of github.com:tgttunstall/LSHTM_analysis
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2020-01-28 10:17:24 +00:00 |
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d787f6fd45
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Update README.md
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2020-01-28 10:14:08 +00:00 |
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1e304e4f9d
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saving data_extraction from home
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2020-01-28 10:13:01 +00:00 |
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