|
|
fcb4b85747
|
modified bp with option for adding stats and boxplplots. Moved old one to redundant
|
2021-09-02 12:50:24 +01:00 |
|
|
|
826d3c72b7
|
added functions for bp with stat and tested them
|
2021-08-27 14:05:00 +01:00 |
|
|
|
edb409baef
|
renamed dm_om barplot function scriptto lf_bp_stability.R
|
2021-08-27 13:03:39 +01:00 |
|
|
|
da9bb67706
|
added function for stats from lf data
|
2021-08-27 13:01:52 +01:00 |
|
|
|
6e01ef22c0
|
added stat_bp_stability.R which needs to be a function for generating stat plots
|
2021-08-26 16:37:56 +01:00 |
|
|
|
6d9412d232
|
playing with dm_om (other)plots data and graph on gid branch
|
2021-08-26 16:35:46 +01:00 |
|
|
|
0e44958585
|
added log10 OR and P values to myaf_or_calcs.R
|
2021-08-23 20:01:01 +01:00 |
|
|
|
182465d579
|
added corr plots as function for interactive graphs on shiny
|
2021-08-20 18:52:47 +01:00 |
|
|
|
f7aac58081
|
adde format_results_dynamut2.py and ran shiny scripts for barplots
|
2021-08-19 16:25:38 +01:00 |
|
|
|
8cdf720702
|
added pdb_fasta_plot.R for generating some useful plots for shiny
|
2021-08-17 10:55:06 +01:00 |
|
|
|
8de22e14f3
|
extracting gid seq from pdb file using pdbtools
|
2021-08-17 10:53:26 +01:00 |
|
|
|
2511162a1d
|
added aa_index/ with script that return dfs for plots for shiny perhaps
|
2021-08-13 16:22:11 +01:00 |
|
|
|
4733ec9db0
|
resuming work after conference
|
2021-08-05 16:54:34 +01:00 |
|
|
|
a9119d7f03
|
indicated which cols are not available for pnca as I ran these scripts for generating plots for the poster
|
2021-07-07 13:12:29 +01:00 |
|
|
|
55adc3fa60
|
added leg_title size for bp function
|
2021-07-07 13:11:13 +01:00 |
|
|
|
59a1213f65
|
generated pncA plot for poster for ps_combined
|
2021-07-07 11:38:07 +01:00 |
|
|
|
cb3a0f71da
|
reran plots with current lig dist
|
2021-06-30 17:35:57 +01:00 |
|
|
|
ed2fc016ca
|
added the almost done shiny for barplots subcolours
|
2021-06-30 17:20:04 +01:00 |
|
|
|
374764b136
|
renamed barplot_colour_function.R to bp_subcolours.R and reflected it in scripts using it.
|
2021-06-29 14:05:48 +01:00 |
|
|
|
db66fdb844
|
added barplots_subcolours.R that generates heatmap style barplots
|
2021-06-29 14:00:10 +01:00 |
|
|
|
c9a5e7de6b
|
moved subcols script to redundant
|
2021-06-29 13:59:38 +01:00 |
|
|
|
ac09cfc4e0
|
moved barplot_colour_function.R to functions
|
2021-06-29 13:58:22 +01:00 |
|
|
|
3d4ccc51d7
|
updated running_plotting_scripts.txt with corr_plots.R
|
2021-06-28 17:30:25 +01:00 |
|
|
|
237e293ca3
|
moved corr_data and corr_PS_LIG.R to redundant
|
2021-06-28 17:29:31 +01:00 |
|
|
|
55b5d31c07
|
added corr_plots.R to generate corr plots by adding source data in get_plotting_dfs.R and tested with cmd
|
2021-06-28 17:27:50 +01:00 |
|
|
|
a7d26412e5
|
added corr data to get_plotting_dfs.R and generate corr plots
|
2021-06-28 17:25:45 +01:00 |
|
|
|
2993ab722a
|
moved old logo plots scripts to redundant and updated running_plotting_scripts.txt to reflect these and how to run the single logo_plots.R to generate logo plots
|
2021-06-24 17:45:40 +01:00 |
|
|
|
8de2686401
|
added logo_plots.R that now produces all logo plots while sourcing the get_plotting_df.R script
|
2021-06-24 17:34:53 +01:00 |
|
|
|
0e15c05d8b
|
checked logo_multiple_muts.R with the new sourcing script for data
|
2021-06-24 16:43:23 +01:00 |
|
|
|
6bbc3328b9
|
added get_plotting_dfs.R as a mother script to be sourced by all plotting scripts
|
2021-06-24 14:21:34 +01:00 |
|
|
|
9668452e98
|
made logo_plot.R source script that pull in all the data
|
2021-06-24 14:19:46 +01:00 |
|
|
|
c8be8407e8
|
moved my_pairs_panel.R to functions/
|
2021-06-24 12:13:15 +01:00 |
|
|
|
ca2315523d
|
fixed cmd running script problem for logo plots
|
2021-06-24 12:12:36 +01:00 |
|
|
|
552c5e77aa
|
added first line to all func to run from
|
2021-06-24 10:02:14 +01:00 |
|
|
|
48a85ede0c
|
saving work on logo plots before finishing
|
2021-06-23 16:49:18 +01:00 |
|
|
|
9d964e84b6
|
generated logo_plot.R from cmd, checked
|
2021-06-23 16:35:44 +01:00 |
|
|
|
015e34894f
|
added test_plotting_data.R, and replaced input param of csv into df
|
2021-06-23 16:16:23 +01:00 |
|
|
|
8277b489d6
|
changes made to combining_dfs_plotting.R
|
2021-06-23 16:15:15 +01:00 |
|
|
|
4f4734f565
|
updated logo_plot.R with functions
|
2021-06-23 12:06:41 +01:00 |
|
|
|
5dec604742
|
moved combining_dfs_plotting.R to function and added test script for this as well
|
2021-06-22 18:15:15 +01:00 |
|
|
|
754cd70a6f
|
added files that were moved to redundant
|
2021-06-22 18:06:08 +01:00 |
|
|
|
ea79f3b3c7
|
turned combining_dfs_plotting.R to a function and moved old script to redundant
|
2021-06-22 18:04:10 +01:00 |
|
|
|
cd5cbce3a0
|
updating script to sort out proper merging for plotting
|
2021-06-22 14:46:03 +01:00 |
|
|
|
7f2c1d7ed8
|
took extra lines from data extraction
|
2021-06-21 16:15:44 +01:00 |
|
|
|
a3c10eb842
|
added af_or to add to combining_dfs.py
|
2021-06-21 14:53:04 +01:00 |
|
|
|
1155959e67
|
added deep ddg formatted data to combinig_dfs.py
|
2021-06-21 12:56:06 +01:00 |
|
|
|
3ff9604002
|
added deepddg data to combining_df.py
|
2021-06-21 11:53:56 +01:00 |
|
|
|
25fcebe448
|
added function to add aa code for mcsm and gwas style mutations to a given files
|
2021-06-18 17:48:26 +01:00 |
|
|
|
926d181120
|
saving work before adding files
|
2021-06-18 17:47:09 +01:00 |
|
|
|
0e0f7c89df
|
Merge branch 'gidb_dev'
|
2021-06-14 13:27:00 +01:00 |
|
