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functions
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added test_plotting_data.R, and replaced input param of csv into df
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2021-06-23 16:16:23 +01:00 |
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my_pdbtools
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saving work before adding files
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2021-06-18 17:47:09 +01:00 |
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plotting
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changes made to combining_dfs_plotting.R
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2021-06-23 16:15:15 +01:00 |
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redundant
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moved old af_or_calcs.R to redundant
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2021-06-11 13:27:40 +01:00 |
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aa_code.py
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added function to add aa code for mcsm and gwas style mutations to a given files
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2021-06-18 17:48:26 +01:00 |
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aa_prop.py
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added aa_prop.py and add_aa_prop.py to add aa properties for wt and mutant in a given file containing one letter code wt and mut cols as csv
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2021-06-14 13:24:00 +01:00 |
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add_aa_prop.py
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added aa_prop.py and add_aa_prop.py to add aa properties for wt and mutant in a given file containing one letter code wt and mut cols as csv
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2021-06-14 13:24:00 +01:00 |
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add_chains_pdb.py
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adding and saving files
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2021-02-09 18:30:47 +00:00 |
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af_or_calcs.R
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saving work before adding files
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2021-06-18 17:47:09 +01:00 |
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combining_dfs.py
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added af_or to add to combining_dfs.py
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2021-06-21 14:53:04 +01:00 |
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combining_FIXME.py
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resolving merge conflicts dur to shoddy data
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2020-07-14 14:09:42 +01:00 |
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count.py
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saving before starting work
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2021-06-04 09:38:17 +01:00 |
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data_extraction.py
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took extra lines from data extraction
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2021-06-21 16:15:44 +01:00 |
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data_extraction_epistasis.py
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added ../data_extraction_epistasis.py for getting list for epistasis work
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2020-09-29 16:09:54 +01:00 |
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data_selective_pressure.R
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added af and OR columns in the data
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2020-10-06 19:39:59 +01:00 |
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DOCS
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added test2/ for testing updated foldx script
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2021-02-10 10:16:28 +00:00 |
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dssp_df.py
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updating notes to running_scripts.py as running for another drug-target
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2020-11-17 13:55:16 +00:00 |
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find_missense.py
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tidy script for linking or_kinship with missense variant info
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2020-08-14 16:41:11 +01:00 |
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kd_df.py
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refactoring or_kin script minor changes only
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2020-07-10 12:37:41 +01:00 |
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ks_test_all_PS.R
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added ks_test_all_PS.R, ks_test_dr_PS.R, ks_test_dr_others_PS.R
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2020-09-21 17:46:22 +01:00 |
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ks_test_dr_others_PS.R
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added ks_test_all_PS.R, ks_test_dr_PS.R, ks_test_dr_others_PS.R
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2020-09-21 17:46:22 +01:00 |
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ks_test_dr_PS.R
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added adjusted p-values for DM muts comparison
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2021-02-27 10:42:04 +00:00 |
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mut_electrostatic_changes.py
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changed aa_prop_water to 3 categ according to KD, updated ref dict
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2021-06-14 13:22:56 +01:00 |
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mutate.py
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added mutate.py and run_mutate.sh to create MSA aligbments for mutant sequences required to generate logoplot from sequence in R
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2020-09-14 15:17:49 +01:00 |
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or_kinship_link.py
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resolving missing mutation info in combining script
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2020-09-04 20:56:16 +01:00 |
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pdb_data_exraction.py
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added script to interrogate pdb files mainly for res numbers
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2020-11-16 16:01:31 +00:00 |
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rd_df.py
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dynamut scripts and minor change dir for rd_df.py
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2021-02-10 15:40:33 +00:00 |
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reference_dict.py
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changed aa_prop_water to 3 categ according to KD, updated ref dict
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2021-06-14 13:22:56 +01:00 |
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run_mutate.sh
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added mutate.py and run_mutate.sh to create MSA aligbments for mutant sequences required to generate logoplot from sequence in R
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2020-09-14 15:17:49 +01:00 |
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running_scripts
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calculating af_or using function and cmd options now
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2021-06-11 15:12:08 +01:00 |
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snpinfo_format.py
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script to format snp_info.txt
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2020-08-21 13:23:29 +01:00 |
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temp_results.py
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added test2/ for testing updated foldx script
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2021-02-10 10:16:28 +00:00 |
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tidy_split.py
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data extraction tidy up
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2020-07-08 13:26:33 +01:00 |
