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19287f3b4b
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playing with lineage_dist_dm_om
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2020-09-16 13:23:49 +01:00 |
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1bc7f83916
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added dir scratch_plots/ to practice extra plots
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2020-09-16 11:51:17 +01:00 |
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ae11792f46
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updated plotting_data.R with stability colours as variables
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2020-09-16 11:47:38 +01:00 |
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4d34f5b5d7
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saving work
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2020-09-15 13:34:26 +01:00 |
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aa4294dff2
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updated distribution scripts to try adding points
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2020-09-15 13:33:28 +01:00 |
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3bb2d3c78c
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updating lineage_country.R with different data slices
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2020-09-15 13:14:33 +01:00 |
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65b5a3c049
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added ggridges_lineage_country.R for dist by country
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2020-09-15 12:50:25 +01:00 |
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f72e81664d
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added mutate.py and run_mutate.sh to create MSA aligbments for mutant sequences required to generate logoplot from sequence in R
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2020-09-14 15:17:49 +01:00 |
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da9075458f
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saving logoplot attempts
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2020-09-14 15:13:52 +01:00 |
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ff1e1cdaf1
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added corr_plots_foldx.R
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2020-09-11 20:28:18 +01:00 |
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767418eb18
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updated figure for multi mut plot
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2020-09-11 19:30:20 +01:00 |
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e2a8171113
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added logo_multiple_muts.R
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2020-09-11 18:12:06 +01:00 |
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4e2bf1496a
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added check for active site mut count
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2020-09-11 17:41:40 +01:00 |
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0665bc80a9
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saving extreme muts analysis
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2020-09-11 16:43:27 +01:00 |
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a14fc4dc33
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added extreme_muts.R
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2020-09-11 16:07:23 +01:00 |
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8648320de7
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added delta symbol to plotting_data.R and pretty labels for dr_other_muts figure
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2020-09-11 14:40:37 +01:00 |
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f6a440dc55
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added plotting/other_plots_data.R
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2020-09-11 12:52:17 +01:00 |
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b0c4791206
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results for electrostatic changes
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2020-09-11 10:27:56 +01:00 |
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b12d20e30f
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write merged_df3 files from combining_dfs_plotting
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2020-09-11 09:51:53 +01:00 |
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de3cfae795
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add scripts/mut_electrostatic_changes.py
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2020-09-10 20:18:35 +01:00 |
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09a64932ce
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updated notes with supp table colnames
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2020-09-10 20:15:00 +01:00 |
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69e0c5d05f
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updated logo plot data to source from combining_df_plotting.R
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2020-09-10 19:58:33 +01:00 |
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3ac5ff7078
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added logo plot
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2020-09-10 19:56:33 +01:00 |
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61b91bccb4
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updated Header file with Logolas and ggseqlogo
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2020-09-10 19:55:21 +01:00 |
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96c95fb06c
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added merged_df3_short.csv for supp tables and struct figures
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2020-09-10 19:17:05 +01:00 |
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0699ebfc3a
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saving work
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2020-09-10 19:16:24 +01:00 |
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14182df12f
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saving other_plots.R
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2020-09-10 17:53:49 +01:00 |
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c9040cad21
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Merge branch 'master' of github.com:tgttunstall/LSHTM_analysis
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2020-09-10 16:14:46 +01:00 |
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2540424308
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changes
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2020-09-10 16:06:14 +01:00 |
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8874f9911f
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saving work yet again to be extra sure
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2020-09-10 16:03:04 +01:00 |
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01273a8184
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saving recovered combining_dfs_plotting.R after editing
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2020-09-10 15:52:22 +01:00 |
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e023472091
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move combining_dfs_plotting.R
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2020-09-10 15:36:17 +01:00 |
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9da808680d
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re-adding deleted combining_dfs_plotting.R
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2020-09-10 15:28:10 +01:00 |
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315b350466
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updated gitignore and saving workk
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2020-09-10 14:45:10 +01:00 |
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4cd6c2acd7
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added boxplots and stats for other numerical params
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2020-09-10 14:09:40 +01:00 |
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a04c3d6b0d
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saving work after correlation plots
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2020-09-09 20:56:07 +01:00 |
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9476fac83b
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added correlation plots
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2020-09-09 20:48:21 +01:00 |
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687d5613aa
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renamed file
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2020-09-09 19:11:06 +01:00 |
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464186f5bd
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regenerated combined_or figure with correct muts
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2020-09-09 19:03:52 +01:00 |
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41ff051dc9
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script to generate combined ps plot wit af and or
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2020-09-09 18:57:28 +01:00 |
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926fe37ac3
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saving work
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2020-09-09 18:56:59 +01:00 |
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ae760d193c
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renamed lineage_dist
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2020-09-09 17:34:32 +01:00 |
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6d50b961a5
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corrected subcols_axis name in sucols_all_PS
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2020-09-09 13:36:37 +01:00 |
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f7b55d035a
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lineage dist plots combined generated
Please enter the commit message for your changes. Lines starting
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2020-09-09 13:18:57 +01:00 |
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98cd8a74e8
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generated lineage dist plots combined. needs tweaking
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2020-09-09 12:53:53 +01:00 |
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af7c55b713
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plotting script with resolved gene metadata
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2020-09-09 12:00:42 +01:00 |
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3ebb0d8f06
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updated dir.R
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2020-09-09 11:45:09 +01:00 |
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8507d16b8b
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add dirs and resolving_ambiguous_muts
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2020-09-09 11:36:40 +01:00 |
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8dbe532937
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`resolved ambiguous muts and generated clean output. Also seaprated dir.R
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2020-09-09 11:26:13 +01:00 |
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f10f8f6d2a
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changing category of ambiguous muts
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2020-09-08 18:51:03 +01:00 |
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