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0bb81f6566
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Update README.md
making some of my repos public
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2023-11-27 15:12:37 +00:00 |
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32cd353e12
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Update README.md
making some aspects of myrepos public
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2023-11-27 15:11:46 +00:00 |
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1c616eeb71
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bugfixes
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2023-02-27 20:02:10 +00:00 |
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a405cd8035
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add consurf-only scripts
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2023-02-25 17:08:22 +00:00 |
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9bc18169cf
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tweaks to thesis figs
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2023-02-24 22:38:37 +00:00 |
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e9d841d989
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table generator
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2023-02-23 21:04:58 +00:00 |
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c2d6eb49ea
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figure fixup
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2023-02-21 21:01:00 +00:00 |
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c1441dc0d6
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import thesis plots from Misc
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2023-02-21 20:41:59 +00:00 |
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1571f430a5
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fix HARDCODED HOMEDIRS
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2023-02-19 18:01:03 +00:00 |
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db7e2912e1
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SNP -> SAV for thesis plots
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2023-02-19 17:43:22 +00:00 |
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777d3765cf
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a bunch of small changes
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2023-02-19 17:22:41 +00:00 |
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4640f9024a
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remove empty LF files
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2022-10-11 14:19:39 +01:00 |
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ca73bc9b48
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lf_bp2: extend y
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2022-10-11 12:04:55 +01:00 |
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a74f11ce79
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lf_bp2: extend y
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2022-10-11 12:03:45 +01:00 |
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39fe2da8be
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lf_bp2: extend y
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2022-10-11 12:01:46 +01:00 |
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763ffa55b8
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lf_bp2: extend y
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2022-10-11 11:56:41 +01:00 |
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5966c4e21b
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lf_bp2: extend y
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2022-10-11 11:53:17 +01:00 |
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37e970dea3
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lf_bp2: extend y axis
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2022-10-11 11:51:36 +01:00 |
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25cfe39c71
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saving
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2022-09-14 17:11:51 +01:00 |
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4f01695391
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site_snp_count_bp error handler
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2022-09-09 19:37:38 +01:00 |
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0a4be280c3
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various bugfixes
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2022-09-07 20:03:58 +01:00 |
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590cec5e99
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added pnca plots
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2022-09-06 21:36:40 +01:00 |
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ade1739753
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saving
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2022-09-06 21:36:40 +01:00 |
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23bb087ea3
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plot function fixes for position tiles
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2022-09-06 17:06:01 +01:00 |
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07826fbc91
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alr: remove 113
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2022-09-05 19:32:36 +01:00 |
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bb022470d9
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stuff
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2022-09-05 19:27:17 +01:00 |
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4a34d7a94d
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alr config
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2022-09-05 19:03:49 +01:00 |
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f1f0d3e62e
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alr config
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2022-09-05 19:00:09 +01:00 |
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e9fb582db9
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msa indexes
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2022-09-05 18:49:40 +01:00 |
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1241ad0b22
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various usability tweaks to LogoPlotMSA and position_annotation
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2022-09-05 16:06:10 +01:00 |
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f949592dd8
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added consurf_colours_no_isd to ensure consurf plots are not messed up in the absesnce of 0 categ
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2022-09-05 16:01:21 +01:00 |
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2cec743ae0
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added pnca plot dir to generate plots that weren#t covered in the paper
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2022-09-05 14:02:04 +01:00 |
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1dacebbaf6
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renamed files for lineage_diff_sensitivites.R
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2022-09-05 13:19:06 +01:00 |
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69a0da0a59
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added script for lineage diff sensitivities
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2022-09-04 21:36:49 +01:00 |
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4963f18f1d
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added 113 to alr aa
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2022-09-04 21:36:14 +01:00 |
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58c25e23c0
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added ml_iterator.py
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2022-09-03 14:42:13 +01:00 |
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4976e9d8af
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saving
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2022-09-03 14:41:22 +01:00 |
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2b953583e2
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added combined model FS code and run script
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2022-09-03 12:28:36 +01:00 |
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78704dec5a
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saving
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2022-09-03 12:28:21 +01:00 |
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889bea1e63
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ran ml_iterator for actual genes
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2022-09-03 09:23:37 +01:00 |
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d77389acfc
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running combined model with FS
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2022-09-03 09:22:06 +01:00 |
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c7351970a2
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chmod
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2022-09-02 21:14:02 +01:00 |
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f9ce90e3f4
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saving
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2022-09-02 10:08:58 +01:00 |
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93e958ae6a
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now running for combined gene actual
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2022-09-02 10:04:27 +01:00 |
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00ca7a6b27
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tweaks
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2022-09-02 09:52:11 +01:00 |
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c845d96102
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added combined_model_iterator.py that has oversampling
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2022-09-02 09:50:51 +01:00 |
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338dd329e9
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running ml_iterator_CV for all targets with different CV threholds
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2022-09-01 16:29:32 +01:00 |
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80b4a1850c
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tested to make sure the cols added dont break code
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2022-09-01 16:23:57 +01:00 |
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de9e6a709b
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added 3 cols for snp counts for ML
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2022-09-01 16:11:23 +01:00 |
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2bf91681b4
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preparing to rerun ML iterator
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2022-09-01 13:41:02 +01:00 |
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