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c2f9ca62a9
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much development
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2021-10-28 10:41:43 +01:00 |
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a67a07db2d
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added cmd option for dynamut2 formatting results
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2021-10-18 13:52:29 +01:00 |
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064182d784
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took extra lines from data extraction
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2021-06-21 16:15:44 +01:00 |
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1f8cfc2403
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test2 bugfixes
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2021-02-08 15:24:22 +00:00 |
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ccdd6029be
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updated results summary in the data_extraction.py
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2020-11-12 17:05:29 +00:00 |
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f9fd74812a
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handling missing dir for data_extraction.py
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2020-11-12 13:21:06 +00:00 |
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b0b9e91af7
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added what is required as a minimum to run data_extraction
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2020-11-06 19:04:27 +00:00 |
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b7c7ffc018
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`resolved ambiguous muts and generated clean output. Also seaprated dir.R
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2020-09-09 11:26:13 +01:00 |
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fe49a45447
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various changes
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2020-09-08 17:13:02 +01:00 |
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ddefcd7841
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resolving missing mutation info in combining script
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2020-09-04 20:56:16 +01:00 |
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841d18d10b
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sorted df by position for output in data_extraction
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2020-08-14 17:57:12 +01:00 |
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f8f33abad8
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removed if clause for filenames
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2020-08-13 18:39:16 +01:00 |
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2d8cb01cb7
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added output file for checking
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2020-08-11 18:34:02 +01:00 |
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c80faef0bf
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refactoring or_kin script minor changes only
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2020-07-10 12:37:41 +01:00 |
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01fbc2a87b
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ran foldx and mcsm (get) for 33k dataset
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2020-07-08 20:30:32 +01:00 |
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0e71b23759
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modified extraction to be explicit for extracting nsSNP for specified gene
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2020-07-08 18:47:22 +01:00 |
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1fa0dc6ad4
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minor changes in data extraction
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2020-07-08 16:01:54 +01:00 |
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c958cc1081
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data extraction tidy up
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2020-07-08 13:26:33 +01:00 |
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a4670b9944
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saving work for the day
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2020-07-07 18:31:14 +01:00 |
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a7f21cfb14
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adding clean files for rerrun 35k dataset
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2020-07-07 18:28:55 +01:00 |
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90cbb49560
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added fixme: for some necessary required changes
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2020-07-02 14:16:40 +01:00 |
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8d1daabff4
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ran struc param analysis
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2020-06-17 19:36:02 +01:00 |
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e21635fe02
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inlcuded the revised master file for 35k isolates
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2020-06-16 11:39:11 +01:00 |
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65db4a090e
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added pdb_chain splitter code and wrapper
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2020-05-13 16:54:20 +01:00 |
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7f66d5d19e
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adding commands for use of pdbtools
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2020-05-12 12:50:49 +01:00 |
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e50466da39
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add wrapper and mcsm library
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2020-04-16 17:45:24 +01:00 |
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f5241048b4
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saving work for today
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2020-04-09 16:40:45 +01:00 |
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7a8bbc6595
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minor tweaks
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2020-04-08 18:27:09 +01:00 |
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cc9cdbcad5
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refactoring code to make it take command line args
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2020-04-06 19:03:41 +01:00 |
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