saving work for today

mcsm/mcsm_results.py

@@ -110,17 +110,16 @@ def build_result_dict(web_result_raw):
     mytext = mytext.replace('ange:\n', 'ange: ')
     #print(mytext)
     
-    # initiliase results_dict
-    results_dict = {}
+    # initiliase result_dict
+    result_dict = {}
     for line in mytext.split('\n'):
         fields = line.split(':')
         #print(fields)
         if len(fields) > 1:  # since Mutaton information is empty
             dict_entry = dict([(x, y) for x, y in zip(fields[::2], fields[1::2])])
-        results_dict.update(dict_entry)
+        result_dict.update(dict_entry)
         
-    return results_dict
-     
+    return result_dict  
 #=======================================================================
 #%% call function
 #request_results(infile_url)

scripts/data_extraction.py

@@ -745,9 +745,9 @@ del(c1, c2, col_to_split1, col_to_split2, comp_gene_samples, dr_WF0, dr_df, dr_m
 
 out_filename1 = gene.lower() + '_ambiguous_muts.csv'
 outfile1 = outdir + '/' + out_filename1
-print('Writing file: ambiguous muts',
-      '\nFilename:', out_filename1,
-      '\nPath:',  outdir)
+print('Writing file: ambiguous muts'
+      , '\nFilename:', out_filename1
+      , '\nPath:',  outdir)
 
 #common_muts = ['gene_matchVal180Phe','gene_matchGln10Pro'] # test
 inspect = gene_LF1[gene_LF1['mutation'].isin(common_muts)]