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Tanushree Tunstall 2021-06-04 09:38:17 +01:00
parent 8009c3fe3d
commit 18af246c24
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scripts/count.py
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@ -311,7 +311,6 @@ n_stop*100 #0.11
all_tot = n_del*100 + n_ins*100 + n_stop*100 #1.2 all_tot = n_del*100 + n_ins*100 + n_stop*100 #1.2
#%% count pncA WT #%% count pncA WT
wt_gene = meta_data.loc[meta_data[dr_muts_col].str.contains('WT', na = False, regex = True, case = False) | meta_data[other_muts_col].str.contains('WT', na = False, regex = True, case = False) ] wt_gene = meta_data.loc[meta_data[dr_muts_col].str.contains('WT', na = False, regex = True, case = False) | meta_data[other_muts_col].str.contains('WT', na = False, regex = True, case = False) ]
meta_data['muts_and_lineage'] = meta_data[dr_muts_col] + meta_data[other_muts_col] + meta_data['lineage'] meta_data['muts_and_lineage'] = meta_data[dr_muts_col] + meta_data[other_muts_col] + meta_data['lineage']