diff --git a/scripts/count.py b/scripts/count.py index c82f805..cb6d44b 100755 --- a/scripts/count.py +++ b/scripts/count.py @@ -311,7 +311,6 @@ n_stop*100 #0.11 all_tot = n_del*100 + n_ins*100 + n_stop*100 #1.2 #%% count pncA WT - wt_gene = meta_data.loc[meta_data[dr_muts_col].str.contains('WT', na = False, regex = True, case = False) | meta_data[other_muts_col].str.contains('WT', na = False, regex = True, case = False) ] meta_data['muts_and_lineage'] = meta_data[dr_muts_col] + meta_data[other_muts_col] + meta_data['lineage']