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perfomed LR analysis and tidyed up clinical formatting code

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This commit is contained in:
Tanushree Tunstall 2020-11-24 18:46:47 +00:00
parent 08e01abfb5
commit f0c0fd72d1
5 changed files with 296 additions and 301 deletions
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12
colnames_clinical_meds.R
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@ -8,7 +8,7 @@ getwd()
########################################################################
########################################################################
clinical_cols = c("mosaic"
clinical_cols_data = c("mosaic"
, "ia_exac_copd"
, "death"
#, "obese2" #inc peaeds, but once you subset data for adults, its the same!
@ -17,7 +17,7 @@ clinical_cols = c("mosaic"
, "sfluv"
, "h1n1v"
, "age"
, "gender"
, "gender"
, "asthma"
, "vl_pfu_ul_npa1"
, "los"
@ -36,6 +36,14 @@ clinical_cols = c("mosaic"
, "inresp_sev"
, "steroid")
clinical_cols_added = c("age_bins"
, "o2_sat_bin"
, "onset_initial_bin"
, "steroid_ics"
, "t1_resp_recoded" )
clinical_cols = c(clinical_cols_data, clinical_cols_added)
sig_npa_cols = c("eotaxin_npa1"
, "eotaxin3_npa1"
, "eotaxin3_npa2"