59 lines
1.6 KiB
Python
Executable file
59 lines
1.6 KiB
Python
Executable file
#!/usr/bin/env python3
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# -*- coding: utf-8 -*-
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"""
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Created on Sat May 28 05:25:30 2022
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@author: tanu
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"""
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import os
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gene = 'pncA'
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drug = 'pyrazinamide'
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#total_mtblineage_u = 8
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homedir = os.path.expanduser("~")
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os.chdir( homedir + '/git/ML_AI_training/')
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from UQ_ML_data import *
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setvars(gene,drug)
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from UQ_ML_data import *
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# from YC run_all_ML: run locally
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from UQ_MultModelsCl import MultModelsCl
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print('\n#####################################################################\n')
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print('TESTING cmd:'
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, '\nGene name:', gene
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, '\nDrug name:', drug
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, '\nTotal input features:', X.shape
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, '\n', Counter(y))
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print('Strucutral features (n):'
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, len(common_cols_stabiltyN) + len(foldX_cols) + len(X_strFN)
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, '\nThese are:'
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, '\nCommon stablity features:', common_cols_stabiltyN
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, '\nFoldX columns:', foldX_cols
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, '\nOther struc columns:', X_strFN
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, '\n================================================================\n')
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print('Evolutionary features (n):'
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, len(X_evolFN)
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, '\nThese are:\n'
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, X_evolFN
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, '\n================================================================\n')
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print('Genomic features (n):'
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, len(X_genomicFN)
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, '\nThese are:\n'
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, X_genomic_mafor, '\n'
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, X_genomic_linegae
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, '\n================================================================\n')
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print('Categorical features (n):'
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, len(categorical_FN)
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, '\nThese are:\n'
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, categorical_FN
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, '\n================================================================\n')
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print('\n#####################################################################\n')
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