adding prints to pnca_config file

This commit is contained in:
Tanushree Tunstall 2022-05-29 06:58:21 +01:00
parent 693a5324c1
commit c91a994828
2 changed files with 132 additions and 20 deletions

View file

@ -10,7 +10,7 @@ import os
gene = 'pncA'
drug = 'pyrazinamide'
total_mtblineage_u = 8
#total_mtblineage_u = 8
homedir = os.path.expanduser("~")
@ -22,5 +22,29 @@ from UQ_ML_data import *
# from YC run_all_ML: run locally
from UQ_MultModelsCl import MultModelsCl
print('TESTING cmd:'
, '\nGene name:', gene
, '\nDrug name:', drug
, '\nTotal input features:', X.shape
, '\n', Counter(y))
print('TESTING cmd:', Counter(y))
print('Strucutral features (n):'
, len(common_cols_stabiltyN) + len(foldX_cols) + len(X_strFN)
, '\nThese are:'
, '\nCommon stablity features:', common_cols_stabiltyN
, '\nFoldX columns:', foldX_cols
, '\nOther struc columns:', X_strFN
, '\n================================================================\n')
print('Evolutionary features (n):'
, len(X_evolFN)
, '\nThese are:\n'
, X_evolFN
, '\n================================================================\n')
print('Genomic features (n):'
, len(X_genomicFN)
, '\nThese are:\n'
, X_genomic_mafor, '\n'
, X_genomic_linegae
, '\n================================================================\n')