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fixed aa_index creeping categorical values in numerical cols

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Tanushree Tunstall 2022-06-16 17:47:00 +01:00
parent 89cbeb3610
commit c666c426c0
2 changed files with 708 additions and 659 deletions
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1356
UQ_ML_data2.py
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11
rpob_config.py
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@ -15,9 +15,16 @@ drug = 'rifampicin'
homedir = os.path.expanduser("~") homedir = os.path.expanduser("~")
os.chdir( homedir + '/git/ML_AI_training/') os.chdir( homedir + '/git/ML_AI_training/')
from UQ_ML_data import * #---------------------------
# Version 1: no AAindex
#from UQ_ML_data import *
#setvars(gene,drug)
#from UQ_ML_data import *
#---------------------------
from UQ_ML_data2 import *
setvars(gene,drug) setvars(gene,drug)
from UQ_ML_data import * from UQ_ML_data2 import *
# from YC run_all_ML: run locally # from YC run_all_ML: run locally
#from UQ_yc_RunAllClfs import run_all_ML #from UQ_yc_RunAllClfs import run_all_ML