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Tanushree Tunstall 2022-04-05 14:51:21 +01:00
parent 6a9d23ec8f
commit c647773520
3 changed files with 174 additions and 45 deletions
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test_data/sample_data.csv
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@ -1,26 +1,26 @@
id,mutationinformation,position,pyrazinamide,mutation_info_labels,drtype
S1,M1A,1,0,DM,MDR
S2,M1A,1,1,DM,Pre-MDR
S3,M1A,1,1,OM,Sensitive
S4,M1A,1,NA,OM,Others
S5,M1A,1,1,OM,Pre-XDR
S6,M1A,1,1,DM,XDR
S7,M1B,1,NA,OM,MDR
S8,M1B,1,1,DM,MDR
S9,M1B,1,NA,DM,Other
S10,M1B,1,0,OM,Sensitive
S11,M1C,1,NA,OM,Pre-XDR
S12,M1C,1,NA,OM,Pre-XDR
S13,M1C,1,1,OM,MDR
S14,M1C,1,NA,DM,MDR
S15,A2B,2,0,OM,Others
S16,A2B,2,0,OM,XDR
S17,A2C,2,NA,DM,Pre-MDR
S18,A2C,2,1,DM,Pre-MDR
S19,D3E,3,1,DM,XDR
S20,D3E,3,NA,DM,MDR
S21,D3E,3,NA,OM,Pre-MDR
S22,D3P,3,0,OM,Pre-MDR
S23,D3A,3,0,OM,Sensitive
S24,P4A,4,NA,OM,Others
S25,P5A,5,1,DM,Sensitive
sample,mutationinformation,position,pyrazinamide,mutation_info_labels,drtype,lineage
S1,M1A,1,0,DM,MDR,l1
S2,M1A,1,1,DM,Pre-MDR,l2
S3,M1A,1,1,OM,Sensitive,l1
S4,M1A,1,NA,OM,Other,l3
S5,M1A,1,1,OM,Pre-XDR,l2
S6,M1A,1,1,DM,XDR,l4
S7,M1B,1,NA,OM,MDR,l1
S8,M1B,1,1,DM,Other,l1
S9,M1B,1,NA,DM,Other,l2
S10,M1B,1,0,OM,Sensitive,l2
S11,M1C,1,NA,OM,Pre-XDR,l3
S12,M1C,1,NA,OM,Pre-XDR,l1
S13,M1C,1,1,OM,MDR,l1
S14,M1C,1,NA,DM,MDR,l2
S15,A2B,2,0,OM,Other,l4
S16,A2B,2,0,OM,XDR,l4
S17,A2C,2,NA,DM,Pre-MDR,l5
S18,A2C,2,1,DM,Pre-MDR,l1
S19,D3E,3,1,DM,XDR,l2
S20,D3E,3,NA,DM,MDR,l2
S21,D3E,3,NA,OM,Pre-MDR,l1
S22,D3P,3,0,OM,Pre-MDR,l2
S23,D3A,3,0,OM,Sensitive,l5
S24,P4A,4,NA,OM,Other,l6
S25,P5A,5,1,DM,Sensitive,l4

1 id sample mutationinformation position pyrazinamide mutation_info_labels drtype lineage
2 S1 M1A 1 0 DM MDR l1
3 S2 M1A 1 1 DM Pre-MDR l2
4 S3 M1A 1 1 OM Sensitive l1
5 S4 M1A 1 NA OM Others Other l3
6 S5 M1A 1 1 OM Pre-XDR l2
7 S6 M1A 1 1 DM XDR l4
8 S7 M1B 1 NA OM MDR l1
9 S8 M1B 1 1 DM MDR Other l1
10 S9 M1B 1 NA DM Other l2
11 S10 M1B 1 0 OM Sensitive l2
12 S11 M1C 1 NA OM Pre-XDR l3
13 S12 M1C 1 NA OM Pre-XDR l1
14 S13 M1C 1 1 OM MDR l1
15 S14 M1C 1 NA DM MDR l2
16 S15 A2B 2 0 OM Others Other l4
17 S16 A2B 2 0 OM XDR l4
18 S17 A2C 2 NA DM Pre-MDR l5
19 S18 A2C 2 1 DM Pre-MDR l1
20 S19 D3E 3 1 DM XDR l2
21 S20 D3E 3 NA DM MDR l2
22 S21 D3E 3 NA OM Pre-MDR l1
23 S22 D3P 3 0 OM Pre-MDR l2
24 S23 D3A 3 0 OM Sensitive l5
25 S24 P4A 4 NA OM Others Other l6
26 S25 P5A 5 1 DM Sensitive l4