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added test data for runALLclfs

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Tanushree Tunstall 2022-07-16 15:36:15 +01:00
parent c666c426c0
commit 6be17e3e3e
10 changed files with 113 additions and 741 deletions
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22
gid_config.py
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@ -15,9 +15,16 @@ drug = 'streptomycin'
homedir = os.path.expanduser("~")
os.chdir( homedir + '/git/ML_AI_training/')
from UQ_ML_data import *
#---------------------------
# Version 1: no AAindex
#from UQ_ML_data import *
#setvars(gene,drug)
#from UQ_ML_data import *
#---------------------------
from UQ_ML_data2 import *
setvars(gene,drug)
from UQ_ML_data import *
from UQ_ML_data2 import *
# from YC run_all_ML: run locally
#from UQ_yc_RunAllClfs import run_all_ML
@ -43,6 +50,12 @@ print('Strucutral features (n):'
, '\nOther struc columns:', X_str
, '\n================================================================\n')
print('AAindex features (n):'
, len(X_aaindexFN)
, '\nThese are:\n'
, X_aaindexFN
, '\n================================================================\n')
print('Evolutionary features (n):'
, len(X_evolFN)
, '\nThese are:\n'
@ -62,15 +75,14 @@ print('Categorical features (n):'
, categorical_FN
, '\n================================================================\n')
if ( len(X.columns) == len(X_ssFN) +len(X_evolFN) + len(X_genomicFN) + len(categorical_FN) ):
if ( len(X.columns) == len(X_ssFN) + len(X_aaindexFN) + len(X_evolFN) + len(X_genomicFN) + len(categorical_FN) ):
print('\nPass: No. of features match')
else:
print('\nFail: Count of feature mismatch')
sys.exit('\nFail: Count of feature mismatch')
print('\n#####################################################################\n')
################################################################################
#==================
# Baseline models
#==================