dict
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5 changed files with 607 additions and 31 deletions
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@ -92,15 +92,17 @@ def MultClassPipeSKF(input_df, y_targetF, var_type = ['numerical', 'categorical'
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clfs = [
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clfs = [
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('Logistic Regression' , log_reg)
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('Logistic Regression' , log_reg)
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, ('Naive Bayes' , nb)
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#, ('Naive Bayes' , nb)
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, ('K-Nearest Neighbors', knn)
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, ('K-Nearest Neighbors', knn)
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, ('SVM' , svm)
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, ('SVM' , svm)
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, ('MLP' , mlp)
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, ('MLP' , mlp)
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, ('Decision Tree' , dt)
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, ('Decision Tree' , dt)
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, ('Extra Trees' , et)
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, ('Extra Trees' , et)
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, ('Random Forest' , rf)
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, ('Random Forest' , rf)
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, ('Random Forest2' , rf2)
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, ('Naive Bayes' , nb)
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, ('XGBoost' , xgb)
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#, ('Random Forest2' , rf2)
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#, ('XGBoost' , xgb)
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]
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]
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skf = StratifiedKFold(n_splits = skf_splits
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skf = StratifiedKFold(n_splits = skf_splits
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@ -112,17 +114,20 @@ def MultClassPipeSKF(input_df, y_targetF, var_type = ['numerical', 'categorical'
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Y = y_targetF
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Y = y_targetF
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# Initialise score metrics list to store skf results
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# Initialise score metrics list to store skf results
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fscoreL = []
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# fscoreL = []
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mccL = []
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# mccL = []
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presL = []
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# presL = []
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recallL = []
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# recallL = []
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accuL = []
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# accuL = []
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roc_aucL = []
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# roc_aucL = []
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skf_dict = {}
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#scores_df = pd.DataFrame()
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for train_index, test_index in skf.split(input_df, y_targetF):
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for train_index, test_index in skf.split(input_df, y_targetF):
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x_train_fold, x_test_fold = input_df.iloc[train_index], input_df.iloc[test_index]
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x_train_fold, x_test_fold = input_df.iloc[train_index], input_df.iloc[test_index]
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y_train_fold, y_test_fold = y_targetF.iloc[train_index], y_targetF.iloc[test_index]
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y_train_fold, y_test_fold = y_targetF.iloc[train_index], y_targetF.iloc[test_index]
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#fscoreL = {}
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# for train_index, test_index in skf.split(X_array, Y):
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# for train_index, test_index in skf.split(X_array, Y):
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# print('\nSKF train index:', train_index
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# print('\nSKF train index:', train_index
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# , '\nSKF test index:', test_index)
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# , '\nSKF test index:', test_index)
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@ -139,7 +144,7 @@ def MultClassPipeSKF(input_df, y_targetF, var_type = ['numerical', 'categorical'
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, ('classifier' , clf)])
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, ('classifier' , clf)])
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# model_pipeline = Pipeline(steps=[('prep' , MinMaxScaler())
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# model_pipeline = Pipeline(steps=[('prep' , MinMaxScaler())
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# , ('classifier' , clf)])
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# , ('classifier' , clf)])
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model_pipeline.fit(x_train_fold, y_train_fold)
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model_pipeline.fit(x_train_fold, y_train_fold)
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@ -150,33 +155,34 @@ def MultClassPipeSKF(input_df, y_targetF, var_type = ['numerical', 'categorical'
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#----------------
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#----------------
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# F1-Score
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# F1-Score
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fscore = f1_score(y_test_fold, y_pred_fold)
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fscore = f1_score(y_test_fold, y_pred_fold)
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fscoreL.append(fscore)
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fscoreL[clf_name].append(fscore)
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fscoreM = mean(fscoreL)
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print('fscoreL Len: ', len(fscoreL))
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#fscoreM = mean(fscoreL[clf])
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# Matthews correlation coefficient
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# Matthews correlation coefficient
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mcc = matthews_corrcoef(y_test_fold, y_pred_fold)
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mcc = matthews_corrcoef(y_test_fold, y_pred_fold)
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mccL.append(mcc)
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mccL[clf_name].append(mcc)
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mccM = mean(mccL)
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mccM = mean(mccL)
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# Precision
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# # Precision
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pres = precision_score(y_test_fold, y_pred_fold)
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# pres = precision_score(y_test_fold, y_pred_fold)
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presL.append(pres)
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# presL.append(pres)
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presM = mean(presL)
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# presM = mean(presL)
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# Recall
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# # Recall
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recall = recall_score(y_test_fold, y_pred_fold)
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# recall = recall_score(y_test_fold, y_pred_fold)
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recallL.append(recall)
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# recallL.append(recall)
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recallM = mean(recallL)
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# recallM = mean(recallL)
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# Accuracy
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# # Accuracy
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accu = accuracy_score(y_test_fold, y_pred_fold)
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# accu = accuracy_score(y_test_fold, y_pred_fold)
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accuL.append(accu)
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# accuL.append(accu)
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accuM = mean(accuL)
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# accuM = mean(accuL)
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# ROC_AUC
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# # ROC_AUC
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roc_auc = roc_auc_score(y_test_fold, y_pred_fold)
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# roc_auc = roc_auc_score(y_test_fold, y_pred_fold)
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roc_aucL.append(roc_auc)
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# roc_aucL.append(roc_auc)
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roc_aucM = mean(roc_aucL)
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# roc_aucM = mean(roc_aucL)
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clf_scores_df = clf_scores_df.append({'Model' : clf_name
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clf_scores_df = clf_scores_df.append({'Model' : clf_name
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,'F1_score' : fscoreM
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,'F1_score' : fscoreM
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@ -186,4 +192,6 @@ def MultClassPipeSKF(input_df, y_targetF, var_type = ['numerical', 'categorical'
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, 'Accuracy' : accuM
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, 'Accuracy' : accuM
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, 'ROC_curve': roc_aucM}
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, 'ROC_curve': roc_aucM}
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, ignore_index = True)
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, ignore_index = True)
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return clf_scores_df
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return(clf_scores_df)
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#scores_df = scores_df.append(clf_scores_df)
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# return clf_scores_df
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172
loopity_loop.py
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172
loopity_loop.py
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@ -0,0 +1,172 @@
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#!/usr/bin/env python3
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# -*- coding: utf-8 -*-
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"""
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Created on Fri Mar 4 15:25:33 2022
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@author: tanu
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"""
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#%%
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import os, sys
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import pandas as pd
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import numpy as np
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import pprint as pp
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import random
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from sklearn.linear_model import LogisticRegression
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from sklearn.naive_bayes import BernoulliNB
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from sklearn.neighbors import KNeighborsClassifier
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from sklearn.svm import SVC
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from sklearn.tree import DecisionTreeClassifier
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from sklearn.ensemble import RandomForestClassifier, ExtraTreesClassifier
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from sklearn.neural_network import MLPClassifier
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from sklearn.pipeline import Pipeline
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from xgboost import XGBClassifier
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from sklearn.compose import ColumnTransformer
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from sklearn.preprocessing import StandardScaler
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from sklearn.preprocessing import MinMaxScaler, OneHotEncoder
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from sklearn.model_selection import cross_validate
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from sklearn.model_selection import train_test_split
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from sklearn.model_selection import StratifiedKFold
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from sklearn.metrics import confusion_matrix, accuracy_score, precision_score, recall_score
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from sklearn.metrics import roc_auc_score, roc_curve, f1_score, matthews_corrcoef
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from statistics import mean, stdev, median, mode
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#%%
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rs = {'random_state': 42}
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# Done: add preprocessing step with one hot encoder
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# TODO: supply stratified K-fold cv train and test data
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# TODO: get accuracy and other scores through K-fold cv
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# Multiple Classification - Model Pipeline
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def MultClassPipeSKF(input_df, y_targetF, var_type = ['numerical', 'categorical','mixed'], skf_splits = 10):
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'''
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@ param input_df: input features
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@ type: df (gets converted to np.array for stratified Kfold, and helps identify names to apply column transformation)
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@param y_outputF: target (or output) feature
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@type: df or np.array
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returns
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multiple classification model scores
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'''
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# Determine categorical and numerical features
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numerical_ix = input_df.select_dtypes(include=['int64', 'float64']).columns
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numerical_ix
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categorical_ix = input_df.select_dtypes(include=['object', 'bool']).columns
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categorical_ix
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# Determine preprocessing steps ~ var_type
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if var_type == 'numerical':
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t = [('num', MinMaxScaler(), numerical_ix)]
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if var_type == 'categorical':
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t = [('cat', OneHotEncoder(), categorical_ix)]
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if var_type == 'mixed':
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t = [('cat', OneHotEncoder(), categorical_ix)
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, ('num', MinMaxScaler(), numerical_ix)]
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col_transform = ColumnTransformer(transformers = t
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, remainder='passthrough')
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#%% Define classification models to run
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log_reg = LogisticRegression(**rs)
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nb = BernoulliNB()
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knn = KNeighborsClassifier()
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svm = SVC(**rs)
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mlp = MLPClassifier(max_iter = 500, **rs)
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dt = DecisionTreeClassifier(**rs)
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et = ExtraTreesClassifier(**rs)
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rf = RandomForestClassifier(**rs)
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rf2 = RandomForestClassifier(
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min_samples_leaf = 50,
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n_estimators = 150,
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bootstrap = True,
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oob_score = True,
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n_jobs = -1,
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random_state = 42,
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max_features = 'auto')
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xgb = XGBClassifier(**rs, verbosity = 0)
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classification_metrics = {
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'F1_score': []
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,'MCC': []
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,'Precision': []
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,'Recall': []
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,'Accuracy': []
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,'ROC_curve': []
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}
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models = [
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('Logistic Regression' , log_reg)
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#, ('Naive Bayes' , nb)
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, ('K-Nearest Neighbors', knn)
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# , ('SVM' , svm)
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# , ('MLP' , mlp)
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# , ('Decision Tree' , dt)
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# , ('Extra Trees' , et)
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# , ('Random Forest' , rf)
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# , ('Naive Bayes' , nb)
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#, ('Random Forest2' , rf2)
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#, ('XGBoost' , xgb)
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]
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skf = StratifiedKFold(n_splits = skf_splits
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, shuffle = True
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, **rs)
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skf_dict = {}
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fold_no = 1
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fold_dict={}
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for model_name, model in models:
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fold_dict.update({ model_name: {}})
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#scores_df = pd.DataFrame()
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for train_index, test_index in skf.split(input_df, y_targetF):
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x_train_fold, x_test_fold = input_df.iloc[train_index], input_df.iloc[test_index]
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y_train_fold, y_test_fold = y_targetF.iloc[train_index], y_targetF.iloc[test_index]
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#print("Fold: ", fold_no, len(train_index), len(test_index))
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# for keys in skf_dict:
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for model_name, model in models:
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print("start of model", model_name, " loop", fold_no)
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#skf_dict.update({model_name: classification_metrics })
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model_pipeline = Pipeline(steps=[('prep' , col_transform)
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, ('classifier' , model)])
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model_pipeline.fit(x_train_fold, y_train_fold)
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y_pred_fold = model_pipeline.predict(x_test_fold)
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#----------------
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# Model metrics
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#----------------
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score=f1_score(y_test_fold, y_pred_fold)
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mcc = matthews_corrcoef(y_test_fold, y_pred_fold)
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fold=("fold_"+str(fold_no))
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fold_dict[model_name].update({fold: {}})
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pp.pprint(fold_dict)
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print("end of model", model_name, " loop", fold_no)
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fold_dict[model_name][fold].update(classification_metrics)
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#fold_dict[model_name][fold]['F1_score'].append(score)
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fold_dict[model_name][fold].update({'F1_score': score})
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fold_dict[model_name][fold].update({'MCC': mcc})
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fold_no +=1
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#pp.pprint(skf_dict)
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return(fold_dict)
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t3_res = MultClassPipeSKF(input_df = numerical_features_df
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, y_targetF = target1
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, var_type = 'numerical'
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, skf_splits = 10)
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#pp.pprint(t3_res)
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#print(t3_res)
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195
my_data11.py
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195
my_data11.py
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#!/usr/bin/env python3
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# -*- coding: utf-8 -*-
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"""
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Created on Sat Mar 5 12:57:32 2022
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@author: tanu
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"""
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#%%
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# Data, etc for now comes from my_data6.py and/or my_data5.py
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#%% Specify dir and import functions
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homedir = os.path.expanduser("~")
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os.chdir(homedir + "/git/ML_AI_training/")
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#%% Try combinations
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#import sys, os
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#os.system("imports.py")
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def precision(y_true,y_pred):
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return precision_score(y_true,y_pred,pos_label = 1)
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def recall(y_true,y_pred):
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return recall_score(y_true, y_pred, pos_label = 1)
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def f1(y_true,y_pred):
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return f1_score(y_true, y_pred, pos_label = 1)
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#%% Check df features
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numerical_features_df.shape
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categorical_features_df.shape
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all_features_df.shape
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all_features_df.dtypes
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#%% Simple train and test data splits
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target = target1
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#target = target3
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X_trainN, X_testN, y_trainN, y_testN = train_test_split(numerical_features_df,
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target,
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test_size = 0.33,
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random_state = 42)
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X_trainC, X_testC, y_trainC, y_testC = train_test_split(categorical_features_df,
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target,
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test_size = 0.33,
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random_state = 42)
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X_train, X_test, y_train, y_test = train_test_split(all_features_df,
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target,
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test_size = 0.33,
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random_state = 42)
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#%% Stratified K-fold: Single model
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input_df = numerical_features_df
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#X_array = np.array(input_df)
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var_type = 'numerical'
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input_df = all_features_df
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#X_array = np.array(input_df)
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var_type = 'mixed'
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input_df = categorical_features_df
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#X_array = np.array(input_df)
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var_type = 'categorical'
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y_targetF = target1
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#==============================================================================
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numerical_ix = input_df.select_dtypes(include=['int64', 'float64']).columns
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numerical_ix
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categorical_ix = input_df.select_dtypes(include=['object', 'bool']).columns
|
||||||
|
categorical_ix
|
||||||
|
|
||||||
|
# Determine preprocessing steps ~ var_type
|
||||||
|
if var_type == 'numerical':
|
||||||
|
t = [('num', MinMaxScaler(), numerical_ix)]
|
||||||
|
|
||||||
|
if var_type == 'categorical':
|
||||||
|
t = [('cat', OneHotEncoder(), categorical_ix)]
|
||||||
|
|
||||||
|
if var_type == 'mixed':
|
||||||
|
t = [('cat', OneHotEncoder(), categorical_ix)
|
||||||
|
, ('num', MinMaxScaler(), numerical_ix)]
|
||||||
|
|
||||||
|
###############################################################################
|
||||||
|
col_transform = ColumnTransformer(transformers = t
|
||||||
|
, remainder='passthrough')
|
||||||
|
|
||||||
|
###############################################################################
|
||||||
|
rs = {'random_state': 42}
|
||||||
|
del(model1)
|
||||||
|
|
||||||
|
model1 = Pipeline(steps = [('preprocess', MinMaxScaler())
|
||||||
|
, ('log_reg', LogisticRegression(class_weight = 'unbalanced')) ])
|
||||||
|
|
||||||
|
# model1 = Pipeline(steps = [('preprocess', MinMaxScaler())
|
||||||
|
# , ('log_reg', LogisticRegression(**rs)) ])
|
||||||
|
|
||||||
|
del(model1)
|
||||||
|
nb = BernoulliNB()
|
||||||
|
model1 = Pipeline(steps = [('preprocess', MinMaxScaler())
|
||||||
|
, ('nb', nb) ])
|
||||||
|
|
||||||
|
del(model1)
|
||||||
|
knn = KNeighborsClassifier()
|
||||||
|
model1 = Pipeline(steps = [('preprocess', MinMaxScaler())
|
||||||
|
, ('knn', knn) ])
|
||||||
|
del(model1)
|
||||||
|
svm = SVC(**rs)
|
||||||
|
model1 = Pipeline(steps = [('preprocess', MinMaxScaler())
|
||||||
|
, ('svm', svm) ])
|
||||||
|
del(model1)
|
||||||
|
mlp = MLPClassifier(max_iter = 500, **rs)
|
||||||
|
model1 = Pipeline(steps = [('preprocess', MinMaxScaler())
|
||||||
|
, ('mlp', mlp) ])
|
||||||
|
del(model1)
|
||||||
|
dt = DecisionTreeClassifier(**rs)
|
||||||
|
model1 = Pipeline(steps = [('preprocess', MinMaxScaler())
|
||||||
|
, ('dt', dt) ])
|
||||||
|
del(model1)
|
||||||
|
et = ExtraTreesClassifier(**rs)
|
||||||
|
model1 = Pipeline(steps = [('preprocess', MinMaxScaler())
|
||||||
|
, ('et', et) ])
|
||||||
|
del(model1)
|
||||||
|
rf = RandomForestClassifier(**rs)
|
||||||
|
model1 = Pipeline(steps = [('preprocess', MinMaxScaler())
|
||||||
|
, ('rf', rf) ])
|
||||||
|
###############################################################################
|
||||||
|
#%% run
|
||||||
|
del(mm)
|
||||||
|
|
||||||
|
skf = StratifiedKFold(n_splits = 10
|
||||||
|
, shuffle = True
|
||||||
|
, **rs)
|
||||||
|
|
||||||
|
#X_array = np.array(numerical_features_df)
|
||||||
|
#Y = target1
|
||||||
|
|
||||||
|
model_scores_df = pd.DataFrame()
|
||||||
|
fscoreL = []
|
||||||
|
mccL = []
|
||||||
|
presL = []
|
||||||
|
recallL = []
|
||||||
|
accuL = []
|
||||||
|
roc_aucL = []
|
||||||
|
|
||||||
|
# for train_index, test_index in skf.split(X_array, Y):
|
||||||
|
# x_train_fold, x_test_fold = X_array[train_index], X_array[test_index]
|
||||||
|
# y_train_fold, y_test_fold = Y[train_index], Y[test_index]
|
||||||
|
for train_index, test_index in skf.split(input_df, y_targetF):
|
||||||
|
x_train_fold, x_test_fold = input_df.iloc[train_index], input_df.iloc[test_index]
|
||||||
|
y_train_fold, y_test_fold = y_targetF.iloc[train_index], y_targetF.iloc[test_index]
|
||||||
|
|
||||||
|
model1.fit(x_train_fold, y_train_fold)
|
||||||
|
y_pred_fold = model1.predict(x_test_fold)
|
||||||
|
|
||||||
|
#----------------
|
||||||
|
# Model metrics
|
||||||
|
#----------------
|
||||||
|
# F1-Score
|
||||||
|
fscore = f1_score(y_test_fold, y_pred_fold)
|
||||||
|
fscoreL.append(fscore)
|
||||||
|
fscoreM = mean(fscoreL)
|
||||||
|
|
||||||
|
# Matthews correlation coefficient
|
||||||
|
mcc = matthews_corrcoef(y_test_fold, y_pred_fold)
|
||||||
|
mccL.append(mcc)
|
||||||
|
mccM = mean(mccL)
|
||||||
|
|
||||||
|
# Precision
|
||||||
|
pres = precision_score(y_test_fold, y_pred_fold)
|
||||||
|
presL.append(pres)
|
||||||
|
presM = mean(presL)
|
||||||
|
|
||||||
|
# Recall
|
||||||
|
recall = recall_score(y_test_fold, y_pred_fold)
|
||||||
|
recallL.append(recall)
|
||||||
|
recallM = mean(recallL)
|
||||||
|
|
||||||
|
# Accuracy
|
||||||
|
accu = accuracy_score(y_test_fold, y_pred_fold)
|
||||||
|
accuL.append(accu)
|
||||||
|
accuM = mean(accuL)
|
||||||
|
|
||||||
|
# ROC_AUC
|
||||||
|
roc_auc = roc_auc_score(y_test_fold, y_pred_fold)
|
||||||
|
roc_aucL.append(roc_auc)
|
||||||
|
roc_aucM = mean(roc_aucL)
|
||||||
|
|
||||||
|
model_scores_df = model_scores_df.append({'Model' : model1.steps[1][0]
|
||||||
|
,'F1_score' : fscoreM
|
||||||
|
, 'MCC' : mccM
|
||||||
|
, 'Precision': presM
|
||||||
|
, 'Recall' : recallM
|
||||||
|
, 'Accuracy' : accuM
|
||||||
|
, 'ROC_curve': roc_aucM}
|
||||||
|
, ignore_index = True)
|
||||||
|
print('\nModel metrics:\n', model_scores_df)
|
||||||
|
mm = model_scores_df.mean()
|
||||||
|
|
||||||
|
print('\nModel metrics mean:\n', mm)
|
||||||
|
|
||||||
|
print('\nModel metrics:\n', model_scores_df)
|
161
skf_mm.py
Normal file
161
skf_mm.py
Normal file
|
@ -0,0 +1,161 @@
|
||||||
|
#!/usr/bin/env python3
|
||||||
|
# -*- coding: utf-8 -*-
|
||||||
|
"""
|
||||||
|
Created on Thu Mar 10 10:33:15 2022
|
||||||
|
|
||||||
|
@author: tanu
|
||||||
|
"""
|
||||||
|
#%% Stratified KFold: Multiple_models:
|
||||||
|
input_df = numerical_features_df
|
||||||
|
#X_array = np.array(input_df)
|
||||||
|
var_type = 'numerical'
|
||||||
|
|
||||||
|
input_df = all_features_df
|
||||||
|
#X_array = np.array(input_df)
|
||||||
|
var_type = 'mixed'
|
||||||
|
|
||||||
|
input_df = categorical_features_df
|
||||||
|
#X_array = np.array(input_df)
|
||||||
|
var_type = 'categorical'
|
||||||
|
|
||||||
|
targetF = target1
|
||||||
|
#==============================================================================
|
||||||
|
numerical_ix = input_df.select_dtypes(include=['int64', 'float64']).columns
|
||||||
|
numerical_ix
|
||||||
|
|
||||||
|
categorical_ix = input_df.select_dtypes(include=['object', 'bool']).columns
|
||||||
|
categorical_ix
|
||||||
|
# Determine preprocessing steps ~ var_type
|
||||||
|
if var_type == 'numerical':
|
||||||
|
t = [('num', MinMaxScaler(), numerical_ix)]
|
||||||
|
|
||||||
|
if var_type == 'categorical':
|
||||||
|
t = [('cat', OneHotEncoder(), categorical_ix)]
|
||||||
|
|
||||||
|
if var_type == 'mixed':
|
||||||
|
t = [('cat', OneHotEncoder(), categorical_ix)
|
||||||
|
, ('num', MinMaxScaler(), numerical_ix)]
|
||||||
|
|
||||||
|
###############################################################################
|
||||||
|
col_transform = ColumnTransformer(transformers = t
|
||||||
|
, remainder='passthrough')
|
||||||
|
|
||||||
|
###############################################################################
|
||||||
|
rs = {'random_state': 42}
|
||||||
|
|
||||||
|
#log_reg = LogisticRegression(**rs)
|
||||||
|
log_reg = LogisticRegression(class_weight = 'balanced')
|
||||||
|
nb = BernoulliNB()
|
||||||
|
rf = RandomForestClassifier(**rs)
|
||||||
|
|
||||||
|
clfs = [('Logistic Regression', log_reg)
|
||||||
|
,('Naive Bayes' , nb)
|
||||||
|
, ('Random Forest' , rf)
|
||||||
|
]
|
||||||
|
|
||||||
|
#seed_skf = 42
|
||||||
|
skf = StratifiedKFold(n_splits = 10
|
||||||
|
, shuffle = True
|
||||||
|
#, random_state = seed_skf
|
||||||
|
, **rs)
|
||||||
|
#scores_df = pd.DataFrame()
|
||||||
|
fscoreL = []
|
||||||
|
mccL = []
|
||||||
|
presL = []
|
||||||
|
recallL = []
|
||||||
|
accuL = []
|
||||||
|
roc_aucL = []
|
||||||
|
|
||||||
|
# X_array = np.array(input_df)
|
||||||
|
# Y = np.array(target1)
|
||||||
|
# Y = target1
|
||||||
|
|
||||||
|
for train_index, test_index in skf.split(input_df, targetF):
|
||||||
|
print('\nSKF train index:', train_index
|
||||||
|
, '\nSKF test index:', test_index)
|
||||||
|
x_train_fold, x_test_fold = input_df.iloc[train_index], input_df.iloc[test_index]
|
||||||
|
y_train_fold, y_test_fold = targetF.iloc[train_index], targetF.iloc[test_index]
|
||||||
|
# for train_index, test_index in skf.split(X_array, Y):
|
||||||
|
# print('\nSKF train index:', train_index
|
||||||
|
# , '\nSKF test index:', test_index)
|
||||||
|
# x_train_fold, x_test_fold = X_array[train_index], X_array[test_index]
|
||||||
|
# y_train_fold, y_test_fold = Y[train_index], Y[test_index]
|
||||||
|
|
||||||
|
|
||||||
|
clf_scores_df = pd.DataFrame()
|
||||||
|
for clf_name, clf in clfs:
|
||||||
|
# model2 = Pipeline(steps=[('preprocess', MinMaxScaler())
|
||||||
|
# , ('classifier', clf)])
|
||||||
|
model2 = Pipeline(steps=[('preprocess', col_transform)
|
||||||
|
, ('classifier', clf)])
|
||||||
|
|
||||||
|
model2.fit(x_train_fold, y_train_fold)
|
||||||
|
y_pred_fold = model2.predict(x_test_fold)
|
||||||
|
|
||||||
|
#----------------
|
||||||
|
# Model metrics
|
||||||
|
#----------------
|
||||||
|
# F1-Score
|
||||||
|
fscore = f1_score(y_test_fold, y_pred_fold)
|
||||||
|
fscoreL.append(fscore)
|
||||||
|
# print('fscoreL Len: ', len(fscoreL))
|
||||||
|
fscoreM = mean(fscoreL)
|
||||||
|
|
||||||
|
# Matthews correlation coefficient
|
||||||
|
mcc = matthews_corrcoef(y_test_fold, y_pred_fold)
|
||||||
|
mccL.append(mcc)
|
||||||
|
mccM = mean(mccL)
|
||||||
|
|
||||||
|
# Precision
|
||||||
|
pres = precision_score(y_test_fold, y_pred_fold)
|
||||||
|
presL.append(pres)
|
||||||
|
presM = mean(presL)
|
||||||
|
|
||||||
|
# Recall
|
||||||
|
recall = recall_score(y_test_fold, y_pred_fold)
|
||||||
|
recallL.append(recall)
|
||||||
|
recallM = mean(recallL)
|
||||||
|
|
||||||
|
# Accuracy
|
||||||
|
accu = accuracy_score(y_test_fold, y_pred_fold)
|
||||||
|
accuL.append(accu)
|
||||||
|
accuM = mean(accuL)
|
||||||
|
|
||||||
|
# ROC_AUC
|
||||||
|
roc_auc = roc_auc_score(y_test_fold, y_pred_fold)
|
||||||
|
roc_aucL.append(roc_auc)
|
||||||
|
roc_aucM = mean(roc_aucL)
|
||||||
|
|
||||||
|
clf_scores_df = clf_scores_df.append({'Model': clf_name
|
||||||
|
,'F1_score' : fscoreM
|
||||||
|
, 'MCC' : mccM
|
||||||
|
, 'Precision': presM
|
||||||
|
, 'Recall' : recallM
|
||||||
|
, 'Accuracy' : accuM
|
||||||
|
, 'ROC_curve': roc_aucM}
|
||||||
|
, ignore_index = True)
|
||||||
|
#scores_df = scores_df.append(clf_scores_df)
|
||||||
|
|
||||||
|
|
||||||
|
#%% Call functions
|
||||||
|
|
||||||
|
tN_res = MultClassPipeline(X_trainN, X_testN, y_trainN, y_testN)
|
||||||
|
tN_res
|
||||||
|
|
||||||
|
t2_res = MultClassPipeline2(X_train, X_test, y_train, y_test, input_df = all_features_df)
|
||||||
|
t2_res
|
||||||
|
|
||||||
|
#CHECK: numbers are awfully close to each other!
|
||||||
|
|
||||||
|
t3_res = MultClassPipeSKF(input_df = numerical_features_df
|
||||||
|
, y_targetF = target1
|
||||||
|
, var_type = 'numerical'
|
||||||
|
, skf_splits = 10)
|
||||||
|
t3_res
|
||||||
|
|
||||||
|
#CHECK: numbers are awfully close to each other!
|
||||||
|
t4_res = MultClassPipeSKF(input_df = all_features_df
|
||||||
|
, y_targetF = target1
|
||||||
|
, var_type = 'mixed'
|
||||||
|
, skf_splits = 10)
|
||||||
|
t4_res
|
40
untitled21.py
Normal file
40
untitled21.py
Normal file
|
@ -0,0 +1,40 @@
|
||||||
|
#!/usr/bin/env python3
|
||||||
|
# -*- coding: utf-8 -*-
|
||||||
|
"""
|
||||||
|
Created on Thu Mar 10 18:06:34 2022
|
||||||
|
|
||||||
|
@author: tanu
|
||||||
|
"""
|
||||||
|
models = [
|
||||||
|
('Logistic Regression' , log_reg)
|
||||||
|
, ('K-Nearest Neighbors', knn)
|
||||||
|
]
|
||||||
|
|
||||||
|
classification_metrics = {
|
||||||
|
'F1_score': []
|
||||||
|
,'MCC': []
|
||||||
|
,'Precision': []
|
||||||
|
,'Recall': []
|
||||||
|
,'Accuracy': []
|
||||||
|
,'ROC_curve': []
|
||||||
|
}
|
||||||
|
|
||||||
|
folds=[1,2]
|
||||||
|
fold_no=1
|
||||||
|
fold_dict={}
|
||||||
|
for model_name, model in models:
|
||||||
|
fold_dict.update({model_name: {}})
|
||||||
|
|
||||||
|
for f in folds:
|
||||||
|
fold=("fold_"+str(fold_no))
|
||||||
|
for model_name, model in models:
|
||||||
|
print("start of model", model_name, "fold: ", fold)
|
||||||
|
fold_dict[model_name].update({fold: {}})
|
||||||
|
fold_dict[model_name][fold].update(classification_metrics)
|
||||||
|
|
||||||
|
print("end of model", model_name, "fold: ", fold)
|
||||||
|
fold_dict[model_name][fold].update({'F1_score': random.randrange(1,10)})
|
||||||
|
fold_no +=1
|
||||||
|
pp.pprint(fold_dict)
|
||||||
|
|
||||||
|
|
Loading…
Add table
Add a link
Reference in a new issue