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Tanushree Tunstall 2022-05-05 19:44:19 +01:00
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test_data/snippet_res_pnca.py Normal file
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#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Created on Thu Apr 21 14:54:26 2022
@author: tanu
"""
RESULTS:
Total WT in dr_muts_col: 30761
Total matches of pncA SNP matches in dr_mutations_pyrazinamide : 3973
Total samples with > 1 pncA nsSNPs in dr_muts_col: 73
Total matches of UNIQUE pncA SNP matches in dr_mutations_pyrazinamide : 227
=================================================================RESULTS:
Total WT in other_muts_col: 31653
Total matches of pncA SNP matches in other_mutations_pyrazinamide : 943
Total samples with > 1 pncA nsSNPs in other_muts_col: 14
Total matches of UNIQUE pncA SNP matches in other_mutations_pyrazinamide : 200
=================================================================
# First copy index colum
# then use the Vcounts analogy for counts