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Tanushree Tunstall 2022-05-29 13:10:50 +01:00
parent f761dd4479
commit 5202be4adc
52 changed files with 1440 additions and 88 deletions
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imports.py Normal file → Executable file
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@ -99,8 +99,8 @@ from MultClassPipe2 import MultClassPipeline2
from loopity_loop import MultClassPipeSKFLoop
from MultClassPipe3 import MultClassPipeSKFCV
gene = 'pncA'
drug = 'pyrazinamide'
#gene = 'pncA'
#drug = 'pyrazinamide'
#==============
# directories
@ -119,10 +119,10 @@ my_df = pd.read_csv(infile_ml1)
my_df.dtypes
my_df_cols = my_df.columns
geneL_basic = ['pnca']
geneL_basic = ['pncA']
geneL_na = ['gid']
geneL_na_ppi2 = ['rpob']
geneL_ppi2 = ['alr', 'embb', 'katg']
geneL_na_ppi2 = ['rpoB']
geneL_ppi2 = ['alr', 'embB', 'katG']
#%% get cols
mycols = my_df.columns