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add missin .py

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Tanushree Tunstall 2022-05-27 14:30:07 +01:00
parent 77fc14e19d
commit 3727425a0b
3 changed files with 286 additions and 0 deletions
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UQ_TODO_categorical_classification_columns.py Normal file
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#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Created on Wed May 25 02:01:19 2022
@author: tanu
"""
# TODO
categorical_cols = ['ss_class', 'wt_prop_water', 'mut_prop_water', 'wt_prop_polarity',
'mut_prop_polarity', 'wt_calcprop', 'mut_calcprop']
foo['water_prop_change'] = foo['wt_prop_water'] + str('_to_') + foo['mut_prop_water']
foo['water_prop_change'].value_counts()
water_prop_changeD = {
'hydrophobic_to_neutral' : ''
, 'hydrophobic_to_hydrophobic' : 'no_change'
, 'neutral_to_neutral' : 'no_change'
, 'neutral_to_hydrophobic' : ''
, 'hydrophobic_to_hydrophilic' : ''
, 'neutral_to_hydrophilic' : ''
, 'hydrophilic_to_neutral' : ''
, 'hydrophilic_to_hydrophobic' : ''
, 'hydrophilic_to_hydrophilic' : 'no_change'
}
foo['polarity_prop_change'] = foo['wt_prop_polarity'] + str('_to_') + foo['mut_prop_polarity']
foo['polarity_prop_change'].value_counts()
# add a no change category
polarity_prop_changeD = {
'non-polar_to_non-polar' : 'no_change'
, 'non-polar_to_neutral' : ''
, 'neutral_to_non-polar' : ''
, 'neutral_to_neutral' : ''
, 'non-polar_to_basic' : ''
, 'acidic_to_neutral' : ''
, 'basic_to_neutral' : ''
, 'non-polar_to_acidic' : ''
, 'neutral_to_basic' : ''
, 'acidic_to_non-polar' : ''
, 'basic_to_non-polar' : ''
, 'neutral_to_acidic' : ''
, 'acidic_to_acidic' : 'no_change'
, 'basic_to_acidic' : ''
, 'basic_to_basic' : 'no_change'
, 'acidic_to_basic' : ''}
foo['calc_prop_change'] = foo['wt_calcprop'] + str('_to_') + foo['mut_calcprop']
foo['calc_prop_change'].value_counts()
calc_prop_changeD = {
'non-polar_to_non-polar' : 'no_change'
, 'non-polar_to_polar' : ''
, 'polar_to_non-polar' : ''
, 'non-polar_to_pos' : ''
, 'neg_to_non-polar' : ''
, 'non-polar_to_neg' : ''
, 'pos_to_polar' : ''
, 'pos_to_non-polar' : ''
, 'polar_to_polar' : 'no_change'
, 'neg_to_neg' : 'no_change'
, 'polar_to_neg' : ''
, 'pos_to_neg' : ''
, 'pos_to_pos' : ''
, 'polar_to_pos' : ''
, 'neg_to_polar' : ''
, 'neg_to_pos' : ''
}