tidy script to run my versions of multiple modles with blind tests and also with oversampled data

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Tanushree Tunstall 2022-05-28 09:41:30 +01:00
parent b6f0308e42
commit 2898686bf8
3 changed files with 433 additions and 0 deletions

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pnca_config.py Normal file
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#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Created on Sat May 28 05:25:30 2022
@author: tanu
"""
import os, sys
def MyGlobalVars():
global gene
global drug
global homedir
gene = 'pncA'
drug = 'pyrazinamide'
homedir = os.path.expanduser("~")
MyGlobalVars()
os.chdir(homedir + "/git/ML_AI_training/")
# my function
from UQ_MultClassPipe4 import MultClassPipeSKFCV
from UQ_pnca_ML.py import *
#from scriptsfymcn import run_all_ML
# YC_resD2 = run_all_ML(input_pd=X, target_label=y, blind_test_input_df=X_bts, blind_test_target=y_bts, preprocess = True, var_type = 'mixed')
# CVResultsDF = YC_resD2['CrossValResultsDF']
# CVResultsDF.sort_values(by=['matthew'], ascending=False, inplace=True)
# BTSResultsDF = YC_resD2['BlindTestResultsDF']
# BTSResultsDF.sort_values(by=['matthew'], ascending=False, inplace=True)