2.4 KiB
2.4 KiB
| 1 | colnames(merged_df3) |
|---|---|
| 2 | mutationinformation |
| 3 | id |
| 4 | sample |
| 5 | lineage |
| 6 | sublineage |
| 7 | country_code |
| 8 | drtype |
| 9 | ethambutol |
| 10 | mutation |
| 11 | drug_name |
| 12 | mutation_info |
| 13 | mutation_info_orig |
| 14 | mutation_info_v1 |
| 15 | wild_type |
| 16 | mutant_type |
| 17 | position |
| 18 | Mut |
| 19 | Mut_copy |
| 20 | index_orig |
| 21 | index_orig_copy |
| 22 | snp_frequency |
| 23 | pos_count |
| 24 | wt_prop_water |
| 25 | mut_prop_water |
| 26 | wt_prop_polarity |
| 27 | mut_prop_polarity |
| 28 | wt_calcprop |
| 29 | mut_calcprop |
| 30 | total_id_ucount |
| 31 | maf |
| 32 | drtype_numeric |
| 33 | drtype_all_vals |
| 34 | drtype_all_names |
| 35 | drtype_multimode |
| 36 | drtype_mode |
| 37 | drtype_max |
| 38 | mutation_info_labels |
| 39 | dm_om_numeric |
| 40 | dm_om_numeric_orig |
| 41 | dst |
| 42 | dst_multimode |
| 43 | dst_mode |
| 44 | mutation_info_labels_v1 |
| 45 | mutation_info_labels_orig |
| 46 | lineage_list_all |
| 47 | lineage_count_all |
| 48 | lineage_count_unique |
| 49 | lineage_list_unique |
| 50 | lineage_multimode |
| 51 | chain |
| 52 | ligand_id |
| 53 | ligand_distance |
| 54 | duet_stability_change |
| 55 | duet_outcome |
| 56 | ligand_affinity_change |
| 57 | ligand_outcome |
| 58 | duet_scaled |
| 59 | affinity_scaled |
| 60 | wild_pos |
| 61 | wild_chain_pos |
| 62 | ddg_foldx |
| 63 | contacts |
| 64 | electro_rr |
| 65 | electro_mm |
| 66 | electro_sm |
| 67 | electro_ss |
| 68 | disulfide_rr |
| 69 | disulfide_mm |
| 70 | disulfide_sm |
| 71 | disulfide_ss |
| 72 | hbonds_rr |
| 73 | hbonds_mm |
| 74 | hbonds_sm |
| 75 | hbonds_ss |
| 76 | partcov_rr |
| 77 | partcov_mm |
| 78 | partcov_sm |
| 79 | partcov_ss |
| 80 | vdwclashes_rr |
| 81 | vdwclashes_mm |
| 82 | vdwclashes_sm |
| 83 | vdwclashes_ss |
| 84 | volumetric_rr |
| 85 | volumetric_mm |
| 86 | volumetric_sm |
| 87 | volumetric_ss |
| 88 | foldx_scaled |
| 89 | foldx_outcome |
| 90 | deepddg |
| 91 | deepddg_outcome |
| 92 | deepddg_scaled |
| 93 | asa |
| 94 | rsa |
| 95 | ss |
| 96 | ss_class |
| 97 | kd_values |
| 98 | rd_values |
| 99 | wt_3upper |
| 100 | consurf_score |
| 101 | consurf_scaled |
| 102 | consurf_colour |
| 103 | consurf_colour_rev |
| 104 | consurf_ci_upper |
| 105 | consurf_ci_lower |
| 106 | consurf_ci_colour |
| 107 | consurf_msa_data |
| 108 | consurf_aa_variety |
| 109 | snap2_score |
| 110 | snap2_scaled |
| 111 | snap2_accuracy_pc |
| 112 | snap2_outcome |
| 113 | af |
| 114 | beta_logistic |
| 115 | or_logistic |
| 116 | pval_logistic |
| 117 | se_logistic |
| 118 | zval_logistic |
| 119 | ci_low_logistic |
| 120 | ci_hi_logistic |
| 121 | or_mychisq |
| 122 | log10_or_mychisq |
| 123 | or_fisher |
| 124 | pval_fisher |
| 125 | neglog_pval_fisher |
| 126 | ci_low_fisher |
| 127 | ci_hi_fisher |
| 128 | est_chisq |
| 129 | pval_chisq |
| 130 | ddg_dynamut2 |
| 131 | ddg_dynamut2_scaled |
| 132 | ddg_dynamut2_outcome |
| 133 | mcsm_ppi2_affinity |
| 134 | mcsm_ppi2_scaled |
| 135 | mcsm_ppi2_outcome |
| 136 | interface_dist |
| 137 | mut_3upper |
| 138 | seq_offset4pdb |
| 139 | provean_score |
| 140 | provean_outcome |
| 141 | provean_scaled |
| 142 | mmcsm_lig |
| 143 | mmcsm_lig_scaled |
| 144 | mmcsm_lig_outcome |
| 145 | gene_name |
| 146 | pdb_file |
| 147 | lineage_labels |
| 148 | consurf_outcome |
| 149 | sensitivity |
| 150 | foldx_scaled_signC |
| 151 | avg_stability |
| 152 | avg_stability_outcome |
| 153 | avg_stability_scaled |
| 154 | avg_lig_affinity |
| 155 | avg_lig_affinity_outcome |
| 156 | avg_lig_affinity_scaled |