34 lines
656 B
Markdown
34 lines
656 B
Markdown
mCSM Analysis
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=============
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This contains scripts that does the following:
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1. mCSM analysis: using bash, python and R
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2. meta data analysis: using python and R
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Requires an additional 'Data' directory. Batteries not included:-)
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## Assumptions
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1. git repos are cloned to `~/git`
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2. Requires a data directory with an `input` and `output` subdirs. Can be specified on the CLI with `--datadir`, and optionally can be created with `mk_drug_dirs.sh <DRUG_NAME>`
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## LSHTM\_analysis:
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subdirs within this repo
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```
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meta\_data\_analysis/
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*.R
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*.py
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mcsm_analysis
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# <drug>/
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foldx_analysis
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plotting
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*.R
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```
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More docs here as I write them.
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